Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2432 ATGAGCGTGGTTGGTTTTGATTTTGGTAATGAAAGCTGCATTGTGGCTGTTGCAAGGCAAAGGGGGATTGATGTTGTGCTCAATGACGAGTCCAAGCGAGAAACACCTGCAATTGTATGCTTTGGTGACAAACAGCGGTTCCTTGGGACAGCTGGAGCTGCATCTACCATGATGAATCCAAAGAATTCAATCTCACAGATAAAGAGGTTAATTGGAAGACAATTTGCAGATCCAGAATTGCAGCGAGATCTGAAGACTTTCCCTTTTGTTGTCACTGAAGGGCCTGATGGATATCCATTGATTCATGCAAGGTACTTGGGTGAAGTGAAAACATTTACACCTACCCAAGTATTTGGAATGATGTTATCAAACCTTAAAGAAATAGCTGAGAAAAATCTGAATGCTGCTGTTGTTGATTGTTGCATTGGTATTCCACTTTATTTTACTGATCTGCAGAGGAGGGCAGTCTTGGATGCAGCCACTATAGCAGGGTTGCACCCACTTCGCCTATTTCATGAAACAACAGCAACTGCATTGGCTTATGGAATTTATAAGACTGATCTTCCTGAAAATGATCAGCTGAATGTTGCCTTTGTGGATGTTGGACATGCCAGCATGCAAGTGTGCATTGCTGGGTTTAAAAAGGGTCAACTGAAAGTGTTGTCCCAGTCATTCGACAGATCCCTAGGTGGGAGGGACTTTGACGAGGTTCTGTTCAATCATTTTGTTGCTAAGTTTAAGGAGGACTACAAGATTGATGTGTTGCAAAATGCTAGGGCTTGTCTAAGATTGAGGGCTGCTTGTGAAAAGCTGAAGAAGGTTCTTAGTGCTAATCCAGAGGCACCTTTAAACATAGAGTGTTTGATGGACGAGAAGGATGTTAGAGGCTTTATCAAACGTGATGAGTTTGAGCAACTAAGTCTTCCGATTTTGGAACGAGTTAAAGGACCATTGGAAAAGGCACTTGCAGAGGCAGGTCTTACAGTTGATAATATTCACATGGTCGAGGTGGTTGGTTCTGGATCCCGTGTACCAGCTATAAATAAAATATTGACAGAGTTTTTCAAAAAGGAGCCTAGGCGCACGATGAATGCAAGTGAGTGTGTTGCCAGGGGTTGTGCATTGCAGTGTGCAATTCTCAGTCCAACTTTTAAAGTGAGGGAGTTTCAGGTCAATGAAAGCTTTCCTTTCTCGATTTCTCTCTCGTGGAAAGGTTCAAGCTCTGATGCACAGGAAAGTGGGCCAGATAGTAAACAAAGTACCCTTGTCTTCCCCAAGGGAAATCCCATACCAAGTGTCAAGGCACTGACAATCTACAGGCAAGGAACGTTTTCTATTGATGTTCAATATGATGATGTGAGTGGTTTGCAAACACCAGCGAAGATCAGCACATACACTATTGGCCCTTTCCAATCAACAAAAGGTGAAAAAGCAAAAATTAAAGTGAAAGTTAGGCTGAATGTACATGGAATTGTATCTATCGAATCTGCAACTCTCTTGGAAGAGGAAGACATTGAGGTTCCTGTTTCCAAAGAATCAGTTGGGGAAAATGCCAAGATGGAAACTGATGAACCTGCTGCTGGTGCTGCCACACCGCCAAGTACCAATGACAATGATGTTAACATGCAAGATGCTAATGCCAATGCAACTGCTGATGTCCCTGGAGCAGAAAATGGTACCTCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGCTGAGGCTCCAAAGAAAAAGATTAAGAAAATAAATGTACCTGTAGCGGAGTTAGTTTATGGAGCAATGTCAGCTACGGATGTTCAGAAAGCTGTCGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAAGACAAGAAAAATGCTGTAGAGGCTTATGTTTATGACATGAGAAACAAGCTTAGTGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGAGAAGCATTCACTACTAAACTTCAGGAGGTGGAAGACTGGCTATATGAAGACGGTGAAGATGAAACTAAAGGTGTATACATTGCCAAACTAGAAGAGCTCAAAAAGCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACACGGAGAGGGGTTCAATAATTGAACAACTCGGCTATGTTATAAATAGTTATAGAGAAGCTGCAATGTCAAGTGATCCCAAATTTGATCACATTGACATCAGTGAGAAACAGAAGGTCTTGAATGAATGTGTGGAAGCTGAGAACTGGCTAAGGGAGAAAAAGCATCACCAGGATACCCTTCCAAAATATGCCTCCCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCAATTATGACAAAGCCAAAGCCACCCCCACCAAAGCCAACCACTCCAGAAGCACCAGCAACCCCACCTCCTCAGGGCGGTGAACAGCAACAGCAGCCGCAACAATCACCAGCTCAGGAGAATCCTAATGCCACCAGTAATGAAAATGCAGGGGACAATGGTAATCCGGCCCCGCCACCAGCATCTGCCGAACCAATGGAGACTGAGAAGTCAGAGAACACAGACTCTGCTTAA 2592 0.4325 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFLGTAGAASTMMNPKNSISQIKRLIGRQFADPELQRDLKTFPFVVTEGPDGYPLIHARYLGEVKTFTPTQVFGMMLSNLKEIAEKNLNAAVVDCCIGIPLYFTDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLSQSFDRSLGGRDFDEVLFNHFVAKFKEDYKIDVLQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEAGLTVDNIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSSSDAQESGPDSKQSTLVFPKGNPIPSVKALTIYRQGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSTKGEKAKIKVKVRLNVHGIVSIESATLLEEEDIEVPVSKESVGENAKMETDEPAAGAATPPSTNDNDVNMQDANANATADVPGAENGTSEAGDKPVQMDTDTKAEAPKKKIKKINVPVAELVYGAMSATDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLSDKYQEFVIDSEREAFTTKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYTERGSIIEQLGYVINSYREAAMSSDPKFDHIDISEKQKVLNECVEAENWLREKKHHQDTLPKYASPVLLSADIRKKAEAVDRFCKPIMTKPKPPPPKPTTPEAPATPPPQGGEQQQQPQQSPAQENPNATSNENAGDNGNPAPPPASAEPMETEKSENTDSA* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2432 863 CDD HSPA4_like_NDB 2 381 - -
Vra5g2432 863 Gene3D - 598 707 IPR029048 -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 2 15 - -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 30 42 - -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 140 160 - -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 332 348 - -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 363 383 - -
Vra5g2432 863 PRINTS 70kDa heat shock protein signature 477 493 - -
Vra5g2432 863 Pfam Hsp70 protein 3 699 IPR013126 GO:0005524|GO:0140662
Vra5g2432 863 MobiDBLite consensus disorder prediction 783 863 - -
Vra5g2432 863 Gene3D - 38 113 - -
Vra5g2432 863 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 596 IPR029047 -
Vra5g2432 863 Gene3D - 186 360 - -
Vra5g2432 863 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 713 798 IPR029048 -
Vra5g2432 863 Coils Coil 684 704 - -
Vra5g2432 863 MobiDBLite consensus disorder prediction 529 548 - -
Vra5g2432 863 MobiDBLite consensus disorder prediction 789 809 - -
Vra5g2432 863 MobiDBLite consensus disorder prediction 506 580 - -
Vra5g2432 863 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 862 - -
Vra5g2432 863 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vra5g2432 863 MobiDBLite consensus disorder prediction 810 839 - -
Vra5g2432 863 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vra5g2432 863 PANTHER HSC70CB, ISOFORM G-RELATED 1 862 - -
Vra5g2432 863 Gene3D - 5 374 - -
Vra5g2432 863 Gene3D Actin; Chain A, domain 4 230 313 - -
Vra5g2432 863 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Vra5g2432 863 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 600 698 IPR029048 -
Vra5g2432 863 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 631 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2432 Vra-Chr5 31416631 31421893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2432 4 434 Calmodulin-binding Proteins AT1G16030 35.253 4.48e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2432 K09489 - gmx:100813658 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2432 5 31416631 31421893 Vra5g2432 5 31416631 31421893 ECH
Vra5g2432 5 31416631 31421893 Vra9g0136 9 904687 909931 PCT