Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2430 ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTCACCAACGAGGTTATGGTTATCAGAATTCTCCATATTCCCTCCCGGTTAATACTGAATATGCCCATCATCATGATGAAGATGAAGAACAAGAACAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCCCAAAAGGATGGGGATGAAGAAAATGGCATAGATGGAGTTGGTGATGAAAATGATGATGAGGAAGAGGAGGTAGAGGATAACAAGCAGATTGGTTATTATGCCACTAAGAATGAAGATGATTTGGAGTGGCCTCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTCCTCTTGTGCCAGCGTCATCAGCTGCAGCTCCAGTTCCTACTGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTGCTTGATGCATGGGGTGATACGTTTCTTCAACTTGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATAGAAAGGACGGATACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGAGAGCGATGGTGGAGATTGCAAATGGGTTTATTTTAAAAGAATGGATGAGCTAATGAGTTCACCTCCTCAACAAGTTGGTATCTCTTGTGGTTTCGACTCGGGAGATTATGTTTTTATGAACCCTGGAGTTTATTTGAATCAAGCTAATGGGTTGGATGAATTGAGGGATAGTCCTGACAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGATGAAGCTTCTTCCTTCAGTTTGCTTGCTGATTCCATACAAAAATTCAGTAGGATATATGAAAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAGATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA 1164 0.4124 MDGIEDDASYHPNPYRIISHQRGYGYQNSPYSLPVNTEYAHHHDEDEEQEQLEGDDEVDQSNSLQLPQKDGDEENGIDGVGDENDDEEEEVEDNKQIGYYATKNEDDLEWPPKKQKLKSLISTYELAPLVPASSAAAPVPTAPKPSSGGRNSLTDWTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQESDGGDCKWVYFKRMDELMSSPPQQVGISCGFDSGDYVFMNPGVYLNQANGLDELRDSPDNVESTGEEGSDGLQLQAKKRKGRSSDEASSFSLLADSIQKFSRIYEKIENNKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRNDENEDSAENGM* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2430 387 MobiDBLite consensus disorder prediction 359 387 - -
Vra5g2430 387 MobiDBLite consensus disorder prediction 275 313 - -
Vra5g2430 387 Coils Coil 329 360 - -
Vra5g2430 387 MobiDBLite consensus disorder prediction 76 93 - -
Vra5g2430 387 MobiDBLite consensus disorder prediction 21 94 - -
Vra5g2430 387 Pfam Myb/SANT-like DNA-binding domain 155 242 IPR044822 -
Vra5g2430 387 MobiDBLite consensus disorder prediction 371 387 - -
Vra5g2430 387 PANTHER OS01G0718900 PROTEIN 36 385 - -
Vra5g2430 387 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 36 385 IPR044823 -
Vra5g2430 387 Coils Coil 362 382 - -
Vra5g2430 387 Gene3D - 156 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2430 Vra-Chr5 31406868 31408657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2430 318 385 Trihelix Transcription Factor Family AT3G14180 42.647 4.92e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra5g2430 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2430 - - gmx:100814194 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2430 5 31406868 31408657 Vra5g2430 5 31406868 31408657 ECH