Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2428 ATGGGTGTGAACTCGAACAGAGTGGAACACTTCGACAACCGCGAACCCGCCACCCTCAGAATCCAAACCCAGACACCGTCGTTGGAAATCCATGCAGTGCAATTGCCACCACAGCGAACCACACTCCACAAACTCCGACACAGAGTCTCCGAAATCTTCTTCCCCGACGACCCTCTCCACCGTTTCAAGAACCAAACCTCCTTCAAAAAGTTCATCCTCGCACTTCAGTATCTCTTCCCCATTTTCCAATGGGCTCCAAACTACAACCTCACCCTTCTCCGCTCTGATCTCATCTCCGGCCTCACCATTGCCAGCCTCGCCATTCCGCAGGGGATCAGTTATGCCAAGCTTGCAAACTTGCCACCCATTATTGGATTATATTCAAGTTTTGTGCCTCCATTGATATACTCGTTGCTTGGAAGTTCTAAACATCTCGGTGTGGGACCTGTTTCGATCGCGTCTTTGGTTATGGGATCAATGTTAAGTGAGAAAGTTTCTTTCTCACAAGACCCTACTCTGTATCTTGGACTGGCTTTCACCGCCACTTTCTTTGCCGGTGTGTTCCAAGCTTCTCTGGGTATTCTAAGGTTAGGGTTTGTGATTGATTTTCTGTCGAAGGCAACTCTGGTTGGATTCACAGGCGGTGCCGCCATTATCGTGTCACTGCAGCAGCTTAAAGGTTTGCTTGGAATCGTGCACTTTACAAGCCAGATGCAAATAGTTCCGGTCATGATCTCTGTTTTCAAACAACGACATGAGTGGTCATGGCAAACCATTCTTTTGGGATTCGGCTTCTTGGCATTCCTGATGACCACAAGGCACATTAGCTTGAGGAAACCAAAACTCTTCTGGGTTTCAGCCGCTGCACCATTGGCATCAGTTATTCTGTCAACCATTTTAGTCTTTCTTCTGAGAAACAAGACTCATCAGATTTCAATTATTGGACACTTACCAAAGGGACTTAATCCACCTTCATCAAACATGTTATACTTCAGTGGTCCTTACTTGGCTCTTGCTATCAAAACTGGAATTATCACTGGGATCTTATCTTTAACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTAATGAACGTAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGATCTTTTTCTAGATCCGCTGTTAACTACAATGCCGGAGCACAGACAACAGTTTCAAATATAATCATGGCTGCGGCTGTTCTAGTTACCCTTCTGTTTCTCATGCCTCTCTTCTACTATACACCAAATGTTGTCTTAGCGGCCATTATCATCACTGCTGTGATTGGGCTATTAGATTATCAATCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCATGTCTGTGTTCCTTTTTCGGGGTTCTGTTTATTTCAGTGCCTCTAGGCCTTGCTATAGCGGTTGTCATATCAGTCATCAAGATCCTGCTTCATGTCACTCGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACTCAAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGAGTTCCTTCATTCCTCATTTTGGGTGTTGAGTCCCCAATCTATTTCGCTAACTCAACTTATCTTCAAGAAAGAATACTGAGGTGGATTCGAGAAGAGGAAGAACATATAAAAGATAATGATGGAGCTGCATTGAAGTGCATGATTTTAGACATGACAGCTGTGACAGCCATAGACACAAGTGGGCTTGAGACTTTATGTGAACTTAAAAAGACGCTGGAGAAGAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGGCGGAAAAATTGCACAAGTCAAAAATTTTGGAATCCTTTGGATTAAAAGGAGTGTATCTCACAGTGGGAGAAGCTGTGGCTGACATTTCATCGATCTGGAAAGCTCAACCTTGA 1968 0.4375 MGVNSNRVEHFDNREPATLRIQTQTPSLEIHAVQLPPQRTTLHKLRHRVSEIFFPDDPLHRFKNQTSFKKFILALQYLFPIFQWAPNYNLTLLRSDLISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSKHLGVGPVSIASLVMGSMLSEKVSFSQDPTLYLGLAFTATFFAGVFQASLGILRLGFVIDFLSKATLVGFTGGAAIIVSLQQLKGLLGIVHFTSQMQIVPVMISVFKQRHEWSWQTILLGFGFLAFLMTTRHISLRKPKLFWVSAAAPLASVILSTILVFLLRNKTHQISIIGHLPKGLNPPSSNMLYFSGPYLALAIKTGIITGILSLTEGIAVGRTFASLKNYQVDGNKEMMAIGLMNVAGSCSSCYVTTGSFSRSAVNYNAGAQTTVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLLDYQSAYKLWKVDKLDFLACLCSFFGVLFISVPLGLAIAVVISVIKILLHVTRPNTLVLGNIPGTQIFHNINQYKEASRVPSFLILGVESPIYFANSTYLQERILRWIREEEEHIKDNDGAALKCMILDMTAVTAIDTSGLETLCELKKTLEKRSLQLVLANPVGNVAEKLHKSKILESFGLKGVYLTVGEAVADISSIWKAQP* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2428 655 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Vra5g2428 655 TIGRFAM sulP: sulfate permease 80 643 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g2428 655 Pfam Sulfate permease family 93 472 IPR011547 GO:0016021
Vra5g2428 655 CDD STAS_SulP_like_sulfate_transporter 525 640 - -
Vra5g2428 655 ProSiteProfiles STAS domain profile. 524 647 IPR002645 -
Vra5g2428 655 PANTHER SULFATE TRANSPORTER 17 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g2428 655 SUPERFAMILY SpoIIaa-like 529 646 IPR036513 -
Vra5g2428 655 Pfam STAS domain 525 643 IPR002645 -
Vra5g2428 655 Gene3D STAS domain 504 649 IPR036513 -
Vra5g2428 655 PANTHER SLC26A/SULP TRANSPORTER-RELATED 17 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2428 Vra-Chr5 31395505 31400075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2428 1 655 Inorganic Solute Cotransporters AT3G15990 76.712 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2428 K17471 - gmx:100812617 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2428 5 31395505 31400075 Vra9g0133 9 887019 890955 PCT