Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2416 ATGGAGAAAGAAGATCTTGGCCTTGAAATCACCGAGCTCAGGTTGGGGCTTCCCGGCGCCGGTGGGGTGAACAACACCGACAAGGACAAGAATAAGAACAAGAAGAGGGTCTTCTCCGACATTGAAGGTGAAAACAGCTCCTCTGAAGAAGATGGCAAAAAAGAAACCAAGAATCAAGTGGTGGGGTGGCCTCCGGTTTGCTCCTACCGCAAGAAGAACACCGTCAATGAACCTAAACTCTACGTTAAAGTCAGCATGGACGGTGCTCCATTCTTGCGTAAAATCGATTTAGCCATGCACAAGGGATACTCCGACTTGGCCTTTGCCTTGGACAAGTTCTTCGGTTGCTACGGAATCGGCGAAGCGTTGAAGGATGCGGAAAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGCGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTAGGGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAGCCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGAGAAAATGA 567 0.4832 MEKEDLGLEITELRLGLPGAGGVNNTDKDKNKNKKRVFSDIEGENSSSEEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVRK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2416 188 SUPERFAMILY CAD & PB1 domains 73 164 - -
Vra5g2416 188 MobiDBLite consensus disorder prediction 27 57 - -
Vra5g2416 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 171 - -
Vra5g2416 188 Gene3D - 73 176 - -
Vra5g2416 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Vra5g2416 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 171 IPR003311 GO:0005634|GO:0006355
Vra5g2416 188 Pfam AUX/IAA family 36 171 IPR033389 -
Vra5g2416 188 MobiDBLite consensus disorder prediction 16 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2416 Vra-Chr5 31280651 31283233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2416 39 186 B3 DNA Binding Superfamily AT4G23980 30.405 1.61e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra5g2416 AUX_IAA 6.5e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2416 K14484 - gmx:100811879 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2416 5 31280651 31283233 Vra5g2416 5 31280651 31283233 ECH
Vra9g0126 9 810433 813512 Vra5g2416 5 31280651 31283233 PCT