Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2415 ATGTGGTCACAATCACACTCGTCGGAATCTGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACGCTGGGACTTCCCGGTACCAAACGTTCCTTCTCCGACACCGTTGATCTTCATCTTGCAACTTCGCTAAATAAATCAAAACTCCCAACACCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGTTGCAAGTTCGTGAAGGTGGCTGTGGACGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAATTGTACGACAGTTACGAACATTTGATGACAGAATTAGAGAGCATGTTTTGTGGCTTAGACATTCGCAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTACGAGGACAAAGATGGTGATTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGGCTTATGATAAGCTCAGAGGCTATTGGCCTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG 558 0.4659 MWSQSHSSESDAVDCNLKETELTLGLPGTKRSFSDTVDLHLATSLNKSKLPTPKEQVVGWPPVRASRKNAMKSCKFVKVAVDGAPYLRKVDLELYDSYEHLMTELESMFCGLDIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAIGLGPRSSSKCSGST* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2415 185 Pfam AUX/IAA family 72 176 IPR033389 -
Vra5g2415 185 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 6 171 - -
Vra5g2415 185 Gene3D - 68 179 - -
Vra5g2415 185 SUPERFAMILY CAD & PB1 domains 66 166 - -
Vra5g2415 185 ProSiteProfiles PB1 domain profile. 74 169 IPR000270 GO:0005515
Vra5g2415 185 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2415 Vra-Chr5 31271026 31272568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2415 44 177 B3 DNA Binding Superfamily AT1G59750 28.986 1.04e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra5g2415 AUX_IAA 3e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2415 K14484 - gmx:100500488 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2415 5 31271026 31272568 Vra5g2415 5 31271026 31272568 ECH