Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2412 ATGAGTGGGAGGAGTTGGTTGAGTGGCATGCATGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAAGGACTCTACGACACCTCTATCATCTTCTTCGACGGAGCCGTTGCCCGAATCGGCGACCACGTCAACTCCGTCGACGACCCTTTACTGAGAGCGAAATGGATGAACGTGAAGAAAGCGCTGTGCGATGAAACCCAAGTGGTGAAACAACTAGACGCCGAGAGAAGGGCGTTTAAGGAAACTCGATCACGATCACGATCACGATCATATTCCTCCTCCTCCTTTGTTTTTCCACCGTCGGATGAGTATCCCATTCCCACTACCACTCCTCGCGCTTCCACCGTCGACGAACATGACCCCGACGTCTGGAGACCGCCAAGTCGAGATGCCAGAAGGCCCGCCATGCCCACTGCTCGAAAGGACGGAGCTTGGAGCCGAGGCTCTACCAGGCCTGCTGCTGGTGCCGTAAAGCCCAGCAGGGTTAGCTCTGGGCCCCGACCACCGACGGATGGAAAGAACGGCGGCGGCGGTGCTTCTGGAAAGGGTAGCAGGACAGGTGATGGTTCACGTTCAGTTAATGAAGATGGGAAGAAGTCAAAAAAGTATGAGTATGAAGGTCCTGATCCTGAGCTGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGACGATGTTGCAGGCCTCACTCAAGCAAAAAGCCTTCTAGAAGAAGCCCTTGTACTTCCCTTGTGGATTCCCGAGTATTTCCAGGGAATAAGGAGACCTTGGAAAGGAGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAAACTCTTCTTGCTAAAGCAGTTGCCACTGAATGTGGTACCACTTTCTTTAACGTTTCTTCTGCTACTTTGGCATCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCACATGCACCCAGCACCATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCAAAAATGAAGATGGAACCCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGAGTCGTAAAGAGCTGATCCGTATCAATCTGAGGACTATAGAGGTGGCTACTGATGTGAACATAGATGAAGTGGCCAAAAAGACAGAAGGGTACAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCCCTGAATGGTATGAGGCGTAAGATAGCAGGAAAAACACGTGATGAGATCAAGAAGATGTCCAAGGATGAGATTTCCAAGGACCCTGTTGCAATGTGTGATTTTACAGAAGCTTTGAAGAAAGTTCAACCAAGTGTTTCTCAGGCTGACATTCAACGCCATCAAAAGTGGTTTGCCGAATTTGGATCAGCCTAA 1548 0.491 MSGRSWLSGMHEHLKLAREYAAEGLYDTSIIFFDGAVARIGDHVNSVDDPLLRAKWMNVKKALCDETQVVKQLDAERRAFKETRSRSRSRSYSSSSFVFPPSDEYPIPTTTPRASTVDEHDPDVWRPPSRDARRPAMPTARKDGAWSRGSTRPAAGAVKPSRVSSGPRPPTDGKNGGGGASGKGSRTGDGSRSVNEDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKSLLEEALVLPLWIPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSKNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTIEVATDVNIDEVAKKTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKKMSKDEISKDPVAMCDFTEALKKVQPSVSQADIQRHQKWFAEFGSA* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2412 515 Gene3D - 225 505 IPR027417 -
Vra5g2412 515 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 8 515 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vra5g2412 515 Gene3D - 6 81 - -
Vra5g2412 515 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 515 - -
Vra5g2412 515 Pfam AAA+ lid domain 426 468 IPR041569 -
Vra5g2412 515 Gene3D - 405 491 - -
Vra5g2412 515 MobiDBLite consensus disorder prediction 116 138 - -
Vra5g2412 515 SMART AAA_5 263 406 IPR003593 -
Vra5g2412 515 MobiDBLite consensus disorder prediction 79 212 - -
Vra5g2412 515 CDD AAA 261 404 - -
Vra5g2412 515 PANTHER AAA DOMAIN-CONTAINING 5 515 - -
Vra5g2412 515 Pfam ATPase family associated with various cellular activities (AAA) 267 404 IPR003959 GO:0005524|GO:0016887
Vra5g2412 515 MobiDBLite consensus disorder prediction 190 212 - -
Vra5g2412 515 ProSitePatterns AAA-protein family signature. 376 395 IPR003960 GO:0005524|GO:0016887
Vra5g2412 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 512 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2412 Vra-Chr5 31253626 31256111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2412 172 460 Calmodulin-binding Proteins AT3G56690 39.116 4.61e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2412 K07767 - gmx:100801219 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2412 5 31253626 31256111 Vra5g2412 5 31253626 31256111 ECH
Vra5g2412 5 31253626 31256111 Vra9g0124 9 788807 792628 PCT