Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2393 ATGGTGGAGACACAAGGAGCACAGACACACCTCGGAAACTCAACAGAATCAGAAAACAATTACAGTATTAATAGTCATCACAACAATGTTAACCATAATCGTAACTTGATGGTGAAGACTGAGTTGTGTAGGAGATTCAGGAGAGGCGTGTGCGTTCATGGAACCAAATGCGATTACGCGCACAGCGTGGCGGAGCTCCGACGCCAACCCAAACTATGCAGATTGTTCCTTCAAAACAAACACTGCCCCTACGGACGCACCTGTCGCTACCTGCATTCAGCCACACCAACGCCGCCACTGCCACCACCACAACCATCAACTTTTCAAATTCCAAATCTATCATCTCAACCAGTAGGGCAACTTGATCGCTCCTCTTTTGCGGAATACAAGAGAATGAGAACTTGTGCAGAAAGTTGGACAATGCAAAGTGATACTGCTGCTGCTACTGCAAATGCATCAACTAGCACTCTGGCAACAGGTAGCCCTTCCCCTAAGAATGAACCATATGCTGTGAAGTTCGTATTCAAGAAAAACGAACTAAAAAAGATCGATCGCATTTATGCTGATTGGATTTCAGATTTACCTCGCTGA 591 0.4552 MVETQGAQTHLGNSTESENNYSINSHHNNVNHNRNLMVKTELCRRFRRGVCVHGTKCDYAHSVAELRRQPKLCRLFLQNKHCPYGRTCRYLHSATPTPPLPPPQPSTFQIPNLSSQPVGQLDRSSFAEYKRMRTCAESWTMQSDTAAATANASTSTLATGSPSPKNEPYAVKFVFKKNELKKIDRIYADWISDLPR* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2393 196 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Vra5g2393 196 SUPERFAMILY CCCH zinc finger 69 95 IPR036855 GO:0046872
Vra5g2393 196 Gene3D - 70 95 - -
Vra5g2393 196 Gene3D - 31 69 - -
Vra5g2393 196 SMART c3hfinal6 37 63 IPR000571 GO:0046872
Vra5g2393 196 SMART c3hfinal6 67 94 IPR000571 GO:0046872
Vra5g2393 196 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 190 IPR045877 GO:0003729
Vra5g2393 196 SUPERFAMILY CCCH zinc finger 36 68 IPR036855 GO:0046872
Vra5g2393 196 ProSiteProfiles Zinc finger C3H1-type profile. 37 64 IPR000571 GO:0046872
Vra5g2393 196 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 25 190 - -
Vra5g2393 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 62 IPR000571 GO:0046872
Vra5g2393 196 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 93 IPR000571 GO:0046872
Vra5g2393 196 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2393 37 100 C3H Transcription Factor Family AT1G68200 38.889 1.80e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g2393 zf-CCCH 8.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2393 - - vun:114185879 272.322