Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2390 ATGGACGATATCCTGCATCTAATTTGCCCTAATTCTTCATTTATTTGGGATGGAGAGAGGTTCTCTGACTGCTTTGAAGACATTGTTTTAGGTTTTGGAGTTAACATAGTGACTGTTGTTATGGTCGTTGTGCTTGGATTTAGTCACAAGATTGATCGAAGGTCAGATGGCCAGATGAACTTTCCAGAAAAAATAGTCATGGATTTTATACCAGCTTTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACATTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAGTTGATGGTGTGGGTAAATATTATTTTCTTCACAAAGCGTGGCGGCAGTCACCACATTGTCTTCAATCGTGTTTTATGTTTCTGGTGGATTCCTAAAGCAATATTGGCAGTTTTGTATTTGATGACAAAGATTTCATCATTTAAGGTTTCAATTTGCATCACGGAAAGCTTAGTCGTTCTCTTGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGATTCTGATGACCTATTGCCACTACCGACTGATATGGATCCTTCTTCCTGTCATGATGTGATTTCTTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTAATCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTCTATTGGTTTTGCGGGGCCACTCCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCGGTGAATTGGGATGGGTATTTACTAGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGATCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGCCTACCTCTACAGATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACTCGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCAACTCTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTAATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCACTTGTCCTGAAGATAAAGTTAAAGTGGGAAACAAAAGTTCCTGTCCACCATCATTCCTAAGTGAACAGCCTGATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGCATTAAATATGGTGTTGAATCGTGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCATGGCTCGATTTATTCCAATGAATCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTATATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATCCATCTTATACAATGCCATTCTAGGTCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAATATTCAGGCAATATCTTCTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCAGACGACTTTCCAGTTAATTCATGTACACAGTTCTCTCCGTCGAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTCTTCTAAATCCAAGGAGCAGTCTCTTCTTGGTACAAGTATTGTGCGTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTTTGATGCAAGCTTCTCGAAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCATTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGGGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTGTCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCGGATCTTTATACCATTGATGATTCACTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTAGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGGACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATGCATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAAGCAGCTGGAGGGCTGGACCTTCTTGTAAAGGAAGGAGGGATGTCATTTTCAGTTGGCCAACGGCAACTTCTTTGCCTCGCCCGTGCACTTCTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACCACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGCAACCCACAGGTTCTTCTGAAAGATGAGACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGTAATGTAG 4398 0.3963 MDDILHLICPNSSFIWDGERFSDCFEDIVLGFGVNIVTVVMVVVLGFSHKIDRRSDGQMNFPEKIVMDFIPAFGACLSIVDIFFLWKKEHSSHIVGYHKWFYSCSELMVWVNIIFFTKRGGSHHIVFNRVLCFWWIPKAILAVLYLMTKISSFKVSICITESLVVLLNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLENDGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMDPSSCHDVISSCWQAQLSNNGSNPSLFRALCSAYGWPYLRLGLLKVINDSIGFAGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLTCPEDKVKVGNKSSCPPSFLSEQPDSVQGLGVFIQDACCTWSSSEEQALNMVLNRVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVHGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQSILYNAILGPLMQRKTRLLCTHNIQAISSADKIVVMDKGHIKWIGNSDDFPVNSCTQFSPSNEIDSALQNHGQSCSPNLSSKSKEQSLLGTSIVRALEGAEEIVEVELRKEGKVEIGVYKNYAVFTGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHITLYQKTSYTEIVASLWLSLRLQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNALEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDETSIFSSFVRASVM* 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2390 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 837 IPR003439 GO:0005524
Vra5g2390 1465 SUPERFAMILY ABC transporter transmembrane region 277 583 IPR036640 GO:0005524|GO:0016021
Vra5g2390 1465 ProSitePatterns ABC transporters family signature. 1364 1378 IPR017871 GO:0005524
Vra5g2390 1465 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 223 1445 - -
Vra5g2390 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 223 1445 - -
Vra5g2390 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2390 1465 SMART AAA_5 640 814 IPR003593 -
Vra5g2390 1465 SMART AAA_5 1254 1432 IPR003593 -
Vra5g2390 1465 Pfam ABC transporter 1246 1392 IPR003439 GO:0005524
Vra5g2390 1465 Pfam ABC transporter 631 763 IPR003439 GO:0005524
Vra5g2390 1465 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Vra5g2390 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1452 IPR027417 -
Vra5g2390 1465 Gene3D - 1215 1462 IPR027417 -
Vra5g2390 1465 Gene3D ABC transporter type 1, transmembrane domain 275 583 IPR036640 GO:0005524|GO:0016021
Vra5g2390 1465 SUPERFAMILY ABC transporter transmembrane region 902 1210 IPR036640 GO:0005524|GO:0016021
Vra5g2390 1465 CDD ABCC_MRP_domain1 612 813 - -
Vra5g2390 1465 Gene3D - 609 844 IPR027417 -
Vra5g2390 1465 Gene3D ABC transporter type 1, transmembrane domain 873 1212 IPR036640 GO:0005524|GO:0016021
Vra5g2390 1465 CDD ABC_6TM_MRP7_D1_like 289 574 - -
Vra5g2390 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1228 1461 IPR003439 GO:0005524
Vra5g2390 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 824 IPR027417 -
Vra5g2390 1465 CDD ABCC_MRP_domain2 1226 1445 - -
Vra5g2390 1465 CDD ABC_6TM_MRP7_D2_like 905 1205 - -
Vra5g2390 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2390 1465 Pfam ABC transporter transmembrane region 290 554 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2390 1465 Pfam ABC transporter transmembrane region 906 1153 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2390 Vra-Chr5 31034297 31050228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2390 603 824 Calmodulin-binding Proteins AT2G36910 29.536 6.69e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2390 K05674 - gmx:100814181 2566.19