Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2381 ATGCAGCAAGATCAGCTGAAGAAGGATATCAAAGAGTTAGAGTTTTTCACTGAGTATGGGGATGCCAACCGATACAAGATTCTTGAAGTTGTTGGGAAGGGTAGCTATGGAGTTGTTTGTTCAGCAATTGATACACACACTGGGGGAAAGGTTGCAATAAAGAAGATTCATGATATTTTTGAACATATCTCTGATGCCATTAGAATCCTCAGGGAAGTCAAGTTGCTTAGACTTTTAAGACACCCTGATATTGTTGATATTAAGAGGATCATGTTACCGCCTTCAAAGAGGGAGTTTAAAGATATTTATGTTGTCTTTGAGCTCATGGAGTCTGATCTCCATCAGGTCATCAAAGCTAATGACGACTTGACCCGTGAGCACCATCAGTTTTTTCTTTATCAGATGCTACGTGCGTTGAAGTATATGCATACAGCTAATGTATATCACAGAGACCTTAAACCCAAGAATATCCTGGCAAATGCAAACTGCAAACTGAAAGTTTGTGATTTTGGTTTGGCTAGGGTTGCGTTTAATGATGCCCCAACAACAACATTTTGGACGGATTATGTTGCCACAAGATGGTACAGGGCCCCAGAACTATGTGGTTCCTTCTTTTCTAAGTATACACCGGCAATTGATATATGGAGCATCGGATGCATTTTTGCAGAGGTGTTGACAGGAAAGCCACTATTTCCTGGAAAAAGTGTTGTGCATCAATTAGATTTGATTACCGATCTTCTTGGGACACCATCACCAGAAACTATTGCAGGAGTCCGAAATGACAAGGCTAGGAAGTACTTGATGGAAATGCGGAAAAAATCTCCTGTGCCATTTGAACAGAAATTTCCAAATGCAGATCCATTGGCACTGCGTCTACTGCAAAGGCTTTTAGCATTTGATCCAAAGGATCGACCAACAGCTCAAGAGGCACTATCCGATACATTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCGTCGTGTCAGCCAATTTCACGATTAGAATTCGAGTTTGAGAGGAGACGGGTGACAAAGGACGAAGTTAGGGAACTAATATATCGGGAAATACTGGAATATCATCCGCAGTTGCTTAAAGATTACATGAATGGAACTGAAGGCACTCACTTCCTTTACCCTAGTGCAATAGATCAATTCAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGTCCTGTGATTCCTCCAGAAAGGAAGCATGTCTCCCTTCCAAGGTCTACTGTTCACTCTAGTATAATTCCTCCTACTACACAGCCATCTTTTGCTTCATACGAGAGCAAGCAAATGGTGGCAGAGGCATCAAAGATTTCGAGATCAGTAGAATCAAATTCTGGAAGTCAGTTAAGGAGTTCGCGACCTCCACCAAGAGTGCCAGCAGCCAAACCAGGTCGAATAGTAGGGCCTGTTCTGCACTATGACAATGGGAGAACCATAAAAGATGCTTATGACCAAAGGATCTTCTACCGAAACTCACTTCCTCATGCCGTCTCTCCACACTGTTTCCATAGGGTGCAACCAGCTAACACCAAAGCTACATCAGAAACATACAAAGATATTTCACAAGGCAAACATCAACTCTCATGCCAGCAGTGTAGCATGCCAGCCAGACCAGCTATTGATCTTAACACTAACCCATACTATCAACAGGGGAAGAGAGATCACTTAAATGATCCTGTTGGTTCCATTGATGCAAAACTGCTGCAGGCACAATCTCAATTTGGTGCAGTTGGGGCTGCAGCAGTAGCTGTTGCTGCTCATAGGCATTCAGGGAGCTTTCACTATGGATTGTCATAG 1821 0.4256 MQQDQLKKDIKELEFFTEYGDANRYKILEVVGKGSYGVVCSAIDTHTGGKVAIKKIHDIFEHISDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTTFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSPETIAGVRNDKARKYLMEMRKKSPVPFEQKFPNADPLALRLLQRLLAFDPKDRPTAQEALSDTFFKGLAKVEREPSCQPISRLEFEFERRRVTKDEVRELIYREILEYHPQLLKDYMNGTEGTHFLYPSAIDQFRKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSIIPPTTQPSFASYESKQMVAEASKISRSVESNSGSQLRSSRPPPRVPAAKPGRIVGPVLHYDNGRTIKDAYDQRIFYRNSLPHAVSPHCFHRVQPANTKATSETYKDISQGKHQLSCQQCSMPARPAIDLNTNPYYQQGKRDHLNDPVGSIDAKLLQAQSQFGAVGAAAVAVAAHRHSGSFHYGLS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2381 606 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vra5g2381 606 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2381 606 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2381 606 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vra5g2381 606 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 482 - -
Vra5g2381 606 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vra5g2381 606 MobiDBLite consensus disorder prediction 444 460 - -
Vra5g2381 606 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 482 - -
Vra5g2381 606 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vra5g2381 606 CDD STKc_TDY_MAPK 24 361 - -
Vra5g2381 606 MobiDBLite consensus disorder prediction 444 473 - -
Vra5g2381 606 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2381 606 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2381 Vra-Chr5 30925798 30930640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2381 1 604 MAP Kinase Gene Family AT1G53510 70.484 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra5g2381 Pkinase 6.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2381 - K04371 gmx:100800878 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2381 5 30925798 30930640 Vra5g2381 5 30925798 30930640 ECH