Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2379 ATGGCAGAGGAAGCCACGGATTCTCGAAAGCAAGCGAGGCTCGCAATCATGGAACTGGCCAACATGATAAGCGTTCCGATGGCCCTAAACGCCGTCGTTCGCCTCAACGTCGCCGACGCCATCTGGAACTCCGGCGCCAACATCCCCATCTCTGCCGCCCAGATCCTCCCCCGCATCCTCCCCGCCGGCGACGCCGAGAACCTCCAGCGACTCCTCCGCATCCTCACCAGCTACGGCGTCTTCAAGGAGCACGTCGACGCCGGCGAACGCAAGTACTCCCTCACCGACGTCGGCAAAACGCTTGTCACTGACGAGCAAGGTCTCTCCTACGGTGCTTACGTGCTTCAACACCACCAGGACGCGTTGATGCGAGCGTGGACATTGGTTCACGAGGCAGTGGTGGACCCTACGAAGGAGCCGTTCGAGAGGGCGAACGGTGAGGGAGCGTATGGGTATTATCTGAAGCAGGAAGAGATGAACGAGTTGATGGTGAAGGCCATGTCAGGAGTGTCAGTGCCCTTCATGAGGGCCATGTTAGAGGGCTACGATGGCTTCCAAGGTGTGGAGAGGCTGGTGGACGTGGGTGGTAGTGGCGGTGACTGCCTCCGCATGATCCTGCAGAAACACCCCAGCATCAAGGAGGGGATAAACTTCGACCTCCCTGAAGTTGTGGCCAAAGCACCACCAACCCCATATGTAACCCATGTGGGTGGTGACATGTTCAAATCTATTCCCCAAGGAGACGCTATCTTCATGAAGTGGGTGCTAACAACATGGACGGACGAAGAAATAAAGCAGATAATGCGGAACTGTCACAAAGCACTTCCTGAGGGAGGGAAAGTGATAGCTTGTGAGCCAGTGCTGCCAGAGCATTCAGATGAGAGTCACAGAACAAGGGCGTTGCTTGAGGGTGACATTTTTGTGATGACAATCTACAGAGCGAAGGGGAAGCACAGGACTGAAGAACAGTTCAGGCAGTTAGCCATTGATGCAGGTTTCCCTCGTTTCAGAGCCATCCATGTTGACCATTTTTACACTGTTCTTGAGTTTCAGAAATGA 1059 0.5486 MAEEATDSRKQARLAIMELANMISVPMALNAVVRLNVADAIWNSGANIPISAAQILPRILPAGDAENLQRLLRILTSYGVFKEHVDAGERKYSLTDVGKTLVTDEQGLSYGAYVLQHHQDALMRAWTLVHEAVVDPTKEPFERANGEGAYGYYLKQEEMNELMVKAMSGVSVPFMRAMLEGYDGFQGVERLVDVGGSGGDCLRMILQKHPSIKEGINFDLPEVVAKAPPTPYVTHVGGDMFKSIPQGDAIFMKWVLTTWTDEEIKQIMRNCHKALPEGGKVIACEPVLPEHSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPRFRAIHVDHFYTVLEFQK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2379 352 Pfam O-methyltransferase domain 126 333 IPR001077 GO:0008171
Vra5g2379 352 Gene3D Vaccinia Virus protein VP39 106 352 IPR029063 -
Vra5g2379 352 PANTHER O-METHYLTRANSFERASE 5 351 IPR016461 GO:0008168
Vra5g2379 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Vra5g2379 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Vra5g2379 352 PANTHER OS02G0823400 PROTEIN 5 351 - -
Vra5g2379 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Vra5g2379 352 SUPERFAMILY "Winged helix" DNA-binding domain 8 104 IPR036390 -
Vra5g2379 352 Gene3D - 1 105 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2379 Vra-Chr5 30872100 30875039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2379 1 352 Monolignol Biosynthesis Gene Families AT3G53140 74.095 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2379 - - gmx:100784957 635.95