Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2373 ATGAGGAAGGCCTTGATTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATTGTTATTTCAGTTCTCCTCTACAAAAGATGGAGAAGAAAACAGATGATCCATGAAGAAGGTTATCCAGGAGGGAAGATAGTTATATTCAGGTCCTCAATGCTTAAATCTCTCACAGCTGATGCGATCTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGGTCAGGTGGTTATGGTGTGGTTTATGGAATAAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAAAGAGATAAAGGCTTTGAGAGAGAGTTGCAAGCAATGGCAGACATAAAACACCGCAACATTGTGACCCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATCAGCTAATGCCCAATGGAAGTTTGGACTCCTTTTTGCATGGAAGTTCAAGGGACAAGAAGGTTTTGGATTGGCCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTGGATGAAAATATGGATGCTCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCAACATTTGTGGCTGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGAAGAGCAACACTCAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAGTGATGAAGCATTTTTGGAAGAGGGAACAATGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGAGAAGAAGGAGGAGTTCGTCCTTGATAGTAGCTTAGGAACTTGTTCAATGGAAGAGGTAAATAAGGTGTTCAGCATTGCAATGATGTGTCTTGAACCAGATCCTTTGAATAGGCCAACCATGGGTGATGTTGTCAAAATGCTTGACCAAACAGAAGTAGATAAACTTGTTACAGAATCCTGA 1065 0.4028 MRKALIIAFSITICFIAFVISKIVISVLLYKRWRRKQMIHEEGYPGGKIVIFRSSMLKSLTADAILKKTQKLNNKDIIGSGGYGVVYGIKLDESTALAVKRLNRGTAERDKGFERELQAMADIKHRNIVTLHGYYTAQHYNLLIYQLMPNGSLDSFLHGSSRDKKVLDWPTRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTFVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFLEEGTMLVTWVKAVVREKKEEFVLDSSLGTCSMEEVNKVFSIAMMCLEPDPLNRPTMGDVVKMLDQTEVDKLVTES* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2373 354 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2373 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vra5g2373 354 ProSiteProfiles Protein kinase domain profile. 72 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2373 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 347 - -
Vra5g2373 354 PANTHER BNAA07G39120D PROTEIN 1 347 - -
Vra5g2373 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2373 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Vra5g2373 354 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Vra5g2373 354 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Vra5g2373 354 SUPERFAMILY Protein kinase-like (PK-like) 52 343 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2373 Vra-Chr5 30765687 30768653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2373 3 344 Receptor kinase-like Gene Family AT2G35620 44.058 1.26e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vra5g2373 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2373 - - ahf:112703495 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2373 5 30765687 30768653 Vra5g2373 5 30765687 30768653 ECH