Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2363 ATGACTTGTTTTCCTTTATTTTTCAGTAAGTCATCTTCTTCAGCAAGAAAAGATCCAGAAATTGATGAAGGCATTCATAATGTTAAACTCTACTCCTACAAAGAATTAAGAAATGCCACTGATGACTTCAGTCAAGCCAATAAAATCGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGCAGTGTTGACAAAAATAGCAGAATATTAGTCTACAATTACCTGGAGAATAATAGCCTGTCACAAACTCTTCTCGGTGGAAATCACAATAAAATGTACTTTGATTGGCGAACAAGATGTAAAATAAGTATTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCTCATATTGTTCACAGGGATATAAAAGCAAGCAACATCCTCCTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTTAGCACCCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACAAGGAAAGCAGATGTTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGCAACACGAACACGCGATTACCATTAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCACTGGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAAATTGGCCTTCTTTGCACTCAGGAATCGCCAAAGCTCCGGCCATCCATGTCTTCTGTGGTGAAGATGCTCACAGGAAAAATAGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTTAGAAGGAACGAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACAATACATACTCTTCTTCAGACAACCATGACACTACCATGTCTTCTGCCACAACTACAACTTTTGCTGCAGTATATGATGAAAGCATGTGA 1155 0.3939 MTCFPLFFSKSSSSARKDPEIDEGIHNVKLYSYKELRNATDDFSQANKIGEGGFGSVYKGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNSRILVYNYLENNSLSQTLLGGNHNKMYFDWRTRCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTRLPLEEQFLLERTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGKIDVDDSKITKPALISDFMDLKVRRNEESSSYVKNSSTYNTYSSSDNHDTTMSSATTTTFAAVYDESM* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2363 384 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2363 384 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Vra5g2363 384 Pfam Protein kinase domain 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2363 384 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Vra5g2363 384 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2363 384 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 374 - -
Vra5g2363 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vra5g2363 384 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Vra5g2363 384 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Vra5g2363 384 CDD STKc_IRAK 49 316 - -
Vra5g2363 384 PANTHER - 2 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2363 Vra-Chr5 30602796 30607336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2363 31 370 Receptor kinase-like Gene Family AT1G53430 51.765 2.39e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2363 Pkinase 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2363 - - gmx:100782320 674.085