Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2351 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAACGATCGCTACATCAGTTCGCATATGCAGAACCTCCATCGCCGTCTTCTCCACGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGGTGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTACTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGCGATGCACGTGCAGCACGTCATGCTGTTGTTAAGGAATCTCTTCCTGATATTTTAGGAGCATTATTATGGATTCTTCAATGCAAAAATGAGGTTTTATTAAGCATGGCGTCAAATGTTGCAGTGAAGTTGGTTAGTGTTCTGCCTAATCCGTTGTTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATCTGAGTGCTACAAATGAGAAGGATGTTATGGAAGCACTGAAAGAAACGGAGGCTTCCCTTCGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTCGAAGAGATGACTTTACTTTTGAGCACTATACTATGGCGCTGGCCTCCGTCTAGGTTCTCTGTTTGTAATGATGTAATACTTATGAAAGGTTTAGCAAACATCCATACAAAGACAGATAGTTCTATTAAACTTGCACTTCTAAAGTTGTACACGTCAATAGCTTTATGTGATTCTGCAGCAAGAAGACTTATAGAGGATGAAGAAATATTTCCACAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAAGGGTTTAGGCTTGCTCAGTGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGATGCTCTTGTTGAGGCCATAATTTGTGGAATGACAGAAACTAGGCTGACTTCTAAAAAGTTTGGAAACAACCATGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATAACTCGCTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAGTCTTCTGATTGAAAATATTGAAGACCAATTGTTTGAACCCGTCCTGGCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTATCATCTTGGTCGTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCACTGTGGAGAAAATTTATACCCTTATACTCGTGGTAGTGAGCTCTGCATCAAGTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATCAAGGACTGTTCTAATGATGATTCATTCTCCATGTAATTCCATCTCCTCACACACTAAATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGCCATGCTTGAAAAGCTTATTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCGAAGATGTATCATTGAGAGCAAAGGGATAAAGGTGATTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATCGAAAGGCAAAGCTTTACTCCTCATTTGCATACACATGAAAGGTCTTGTTGCTGTTTTGATAAAGAAGATTGGGAAGGCTCCAACATTCTCTTGTTTTATAGTTTGTTGGCCTTAACAGAAATTCTTCATCAGTGTGACCTTTTACAAGAGAATCCTCAGCAATTTTCTGGAGAGGTGACAAACATTACACCACAGTTTGTTAGCAAACTTCAAGAGATCTATAAAAGCAACTCTTTCAGTCATGGTGTGAGATGGGATATAATATTGGGAGCTAAATCAAATGAGCTTGTTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTAGTGCAGTGGTTTTATTCTGATGAGCTGCCTGGTCCTCCATCTGGATGCTTGTGGGATAATATGGATGATCAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTATTGGCTTGCTGAGTTCTGGATTTTGGAAAATATTCAGAAAGCTTGCTTTAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAGAATAATCAAAATGGCTTATAATCTCTCTCTGTGGAAGTTAGTTGATATTGCGGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCCGGTGAACTAGAAGAATTTGATGATGCACTAGTGGACTTGATTTATTCTGCTTCTATCCAACTTAACTAA 2544 0.3825 MKSGRDKEKENDRYISSHMQNLHRRLLHALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARHAVVKESLPDILGALLWILQCKNEVLLSMASNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLSATNEKDVMEALKETEASLRIVGNIKDFAEGVKKIEYFEEMTLLLSTILWRWPPSRFSVCNDVILMKGLANIHTKTDSSIKLALLKLYTSIALCDSAARRLIEDEEIFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGDALVEAIICGMTETRLTSKKFGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLSLLIENIEDQLFEPVLALEKQIYMAKEGLKANYHLGRRSYLWDILGWLTIHCGENLYPYTRGSELCIKLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRTVLMMIHSPCNSISSHTKFLLSDVLKVKGMPCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYRRCIIESKGIKVIVLLLKRCLNNDIHIERQSFTPHLHTHERSCCCFDKEDWEGSNILLFYSLLALTEILHQCDLLQENPQQFSGEVTNITPQFVSKLQEIYKSNSFSHGVRWDIILGAKSNELVGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPGPPSGCLWDNMDDQEKLFNLQPYVELYWLAEFWILENIQKACFNVIMSCLDSSWRLSIRIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVDLIYSASIQLN* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2351 847 SUPERFAMILY POZ domain 682 782 IPR011333 -
Vra5g2351 847 CDD BTB_POZ_ZBTB_KLHL-like 684 734 - -
Vra5g2351 847 SMART BTB_4 673 785 IPR000210 GO:0005515
Vra5g2351 847 Gene3D Potassium Channel Kv1.1; Chain A 663 825 IPR011333 -
Vra5g2351 847 ProSiteProfiles BTB domain profile. 657 738 IPR000210 GO:0005515
Vra5g2351 847 SUPERFAMILY ARM repeat 48 643 IPR016024 -
Vra5g2351 847 Pfam BTB/POZ domain 682 748 IPR000210 GO:0005515
Vra5g2351 847 Gene3D - 21 371 IPR011989 -
Vra5g2351 847 PANTHER OS06G0674800 PROTEIN 658 846 IPR044953 -
Vra5g2351 847 PANTHER OS06G0674800 PROTEIN 1 657 IPR044953 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vra5g2351 BTB 1e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2351 - - gmx:100786565 1120.15