LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g2346	ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACGCTGGAGGTCGAGAGCAGCGATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCTACCCTTCACTTGGTCTTGAGGCTGAGAGGAGGAACCATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATCGACATTGAGCCAACTGATACGATTGACCGGATCAAGGAACGTGTAGAAGAAAAGGAAGGAATTCCACCTGTGCAGCAGAGACTCATATATGCAGGTAAGCAGCTTGCTGACGACAAAACAGCCAAAGAGTACAACATTGAGGGTGGTTCAGTACTTCATTTGGTGCTTGCATTGAGGGGTGGTATTTATTAA	465	0.4495	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIY*	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g2346	154	PANTHER	-	1	153	-	-
	Vra5g2346	154	PANTHER	UBIQUITIN	1	153	-	-
	Vra5g2346	154	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Vra5g2346	154	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Vra5g2346	154	Pfam	Ubiquitin family	79	150	IPR000626	GO:0005515
	Vra5g2346	154	Pfam	Ubiquitin family	3	74	IPR000626	GO:0005515
	Vra5g2346	154	SUPERFAMILY	Ubiquitin-like	78	152	IPR029071	-
	Vra5g2346	154	PRINTS	Ubiquitin signature	11	31	IPR019956	-
	Vra5g2346	154	PRINTS	Ubiquitin signature	32	52	IPR019956	-
	Vra5g2346	154	PRINTS	Ubiquitin signature	53	74	IPR019956	-
	Vra5g2346	154	CDD	Ubl_NEDD8	79	152	IPR038738	-
	Vra5g2346	154	CDD	Ubl_ubiquitin	1	76	-	-
	Vra5g2346	154	ProSitePatterns	Ubiquitin domain signature.	103	128	IPR019954	-
	Vra5g2346	154	SMART	ubq_7	77	148	IPR000626	GO:0005515
	Vra5g2346	154	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Vra5g2346	154	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Vra5g2346	154	Gene3D	-	1	77	-	-
	Vra5g2346	154	Gene3D	-	78	154	-	-
	Vra5g2346	154	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g2346	Vra-Chr5	30311276	30314143	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g2346	1	76	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	100.000	2.33e-50	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g2346	K12158		-	gmx:100794152	290.812