Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2345 ATGGGGAAAGGAAGAGCACCATGTTGTGATAAGACTAAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGCGCTCTCCCAAAACAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAGAGAGGAAATTTTACAGCAGAGGAAGAGGAAACAATCATAAGACTTCACAGGGCAATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGTTGGGTCCTAAAAAAACTTCAGAATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCGTTTTTCTCAATTGAGAGGCCAAATTCACCCAAGAGCACAACACCTTATAATAATGAATTTTGTGACCAATTATCAATGGAAGATAAAATCGAGAAGGATTCAGAAAAAGCAGTGTCAAGTGAACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCTGCTTCATTTTCTTGTGAGTCAAGCCAGAATGTTGCACACAAACCAGAACAACAATTGGGTTCTCCATCATCCTACCTAGGATCTTATGATGTCGGCCATATTTTAGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATGATAGCCCTGGATCTTTTCAATCAAAGGAAGTCCAATTAGGTGAGTTCTCAGCCAACGAAAACATCATTCTTGGAGAAGAGGGTGAAGCAAGGAAATGGAGCAATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATAATTTCCTACCAGTTGAGCCAGAAATGGACCACACTAAGGCATTTGATTTCGATGATATGACACAAGCAGAATCTGAATTGGACTTTTGTTCTATCCCATTATGGCTCTCTTCGCCTCAAAATACTACTCTCTACTTTAATACAGACCAGTAG 1071 0.4043 MGKGRAPCCDKTKVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIRLHRAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLGPKKTSESSTDESKPESTITSTSSSSSQSFFSIERPNSPKSTTPYNNEFCDQLSMEDKIEKDSEKAVSSELIGMTEDPKESSASFSCESSQNVAHKPEQQLGSPSSYLGSYDVGHILEIPWEPDYEFWKLLDDDDSPGSFQSKEVQLGEFSANENIILGEEGEARKWSNDFENEFGVVGEIKESNKDHNFLPVEPEMDHTKAFDFDDMTQAESELDFCSIPLWLSSPQNTTLYFNTDQ* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2345 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vra5g2345 356 MobiDBLite consensus disorder prediction 111 166 - -
Vra5g2345 356 PANTHER - 1 300 - -
Vra5g2345 356 MobiDBLite consensus disorder prediction 111 129 - -
Vra5g2345 356 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vra5g2345 356 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vra5g2345 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Vra5g2345 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vra5g2345 356 CDD SANT 71 114 IPR001005 -
Vra5g2345 356 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vra5g2345 356 CDD SANT 18 63 IPR001005 -
Vra5g2345 356 SMART sant 68 116 IPR001005 -
Vra5g2345 356 SMART sant 15 65 IPR001005 -
Vra5g2345 356 MobiDBLite consensus disorder prediction 130 166 - -
Vra5g2345 356 Gene3D - 70 142 - -
Vra5g2345 356 Gene3D - 16 68 - -
Vra5g2345 356 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vra5g2345 356 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2345 Vra-Chr5 30278343 30281123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2345 1 295 MYB Transcription Factor Family AT1G79180 43.195 6.05e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g2345 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2345 K09422 - gmx:100101836 529.25