Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2340 ATGGCAGACGAGATTGTTCTGTTGGATACATGGGCAAGCATGTTTGGGATGCGGGTTAGGATTGCATTGGCAGAAAAGGGTGTTAAGTACGAAGGCAAGGAAGAGGATCTCAGAAACAAGAGCGCTTTACTTCTGCAGATGAACCCTGTTCACAAGAAGATTCCAGTTCTCATCCATAATGGGAAACCCATATGTGAATCTGCAATAATAGTGCAGTACATCGATGAGGTCTGGAACCACAACCCTCAACTCTTGCCCTCTGACCCATATCAAAGAGCTCAAGCCAGATTCTGGATGGATTACATTGATAAAAAGGTGTATGATACATGGAGGAAAATGTGGCTTTCTAGTGGAGAGGAGCATGAGACAGGGAAGAAGGAGTTGATCTCTATCTTTAAGCAACTGGAAGAGACACTTGGTGACAAACCTTTTTTTGGGGGTGACATTTTTGGCTTTGTTGATGTTGGTCTGATCCCCTTTTATAGTTGGTTTTATACGTATGAGACATATGGTAACTTCAAAATGGAAGCAGAATGTCCTAAACTCATAGCTTGGGCCAAGAGATGCATGGAGAGAGAGACCGTGTCCAAAACACTTCCTGATGAAAAGAAGGTGTATGTTTCCATCGACCGAATAAAGCACTTTTTTCAAGATAGAGTTTTCATGAACTAA 672 0.4226 MADEIVLLDTWASMFGMRVRIALAEKGVKYEGKEEDLRNKSALLLQMNPVHKKIPVLIHNGKPICESAIIVQYIDEVWNHNPQLLPSDPYQRAQARFWMDYIDKKVYDTWRKMWLSSGEEHETGKKELISIFKQLEETLGDKPFFGGDIFGFVDVGLIPFYSWFYTYETYGNFKMEAECPKLIAWAKRCMERETVSKTLPDEKKVYVSIDRIKHFFQDRVFMN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2340 223 Gene3D Glutaredoxin 1 87 - -
Vra5g2340 223 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 3 210 - -
Vra5g2340 223 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vra5g2340 223 Gene3D - 88 217 - -
Vra5g2340 223 CDD GST_N_Tau 5 78 - -
Vra5g2340 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 215 IPR010987 -
Vra5g2340 223 CDD GST_C_Tau 89 206 IPR045074 GO:0004364|GO:0006749
Vra5g2340 223 SFLD Glutathione Transferase (cytosolic) 2 216 IPR040079 -
Vra5g2340 223 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Vra5g2340 223 SUPERFAMILY GST C-terminal domain-like 76 210 IPR036282 -
Vra5g2340 223 Pfam Glutathione S-transferase, N-terminal domain 7 76 IPR004045 -
Vra5g2340 223 Pfam Glutathione S-transferase, C-terminal domain 125 188 - -
Vra5g2340 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vra5g2340 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 210 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2340 Vra-Chr5 30213244 30214231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2340 1 216 Glutathione S-transferase Gene Family AT1G78380 64.352 2.96e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2340 K00799 - gmx:106796199 382.104