Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2320 ATGGAGGATACTAATCAATGTCGTCGCTATGACCATGACCCACTTCTTCTCACCGACATTTCTTTGCCACAAGAATCCTCTTCTTATACTCGCTGCTCCAATTCTCTTTCGCAAACATCACTGAGCTCTCGGAGTTTGGCTATGGAGGATGTGCTCGTGTGTGGTGACAGTGCCAGTATCGGATTTTCTCGGGAAAATGGAGGTTTGGAAGGGAACACCATGAAGTTCGATGACCCAATTGTGAAAGATGTGTTTGATGGAAGATCTATTTTGGGGTATTCTCTAGCATCCCCAGATTTGGTTATTTGTGGTGGCTCACCGGATATTGCTGGAATTAGCTGTTGTGATTCCCCTGAGTTTTTGAAGAACCAATATTACAAGAATGTGGAGTCATCTATTGAGCTTTCTCTAGAGTATGGAATCAAGGGGTCTCAAGTTGAAGTTGACAATGGCCCTAAGATGCCAACTGTTAAATTCTCCAACTTCTGTCAAACTTTTGAGCAAGAGGAAGAGCTTCTGAGCCCTGAGTCCTCCTTTGAACTTCTTCCACCCCTTCTAACCAAGGATGAGGCACCCCATGATTCCCCTCCAAGAGATGCTGAGATGATAGAAGATAATGGAGTGTCTGAGGAGGCAGAATTGGAGTTCTCAGAAGATGCCGATGATCTTGGGGTAGAAGAGAAACTTAAAAGGCTGAAAAGAGACTTTGAGTGTCAGAGAAAGGAGCTGGCAGAAACAAGGAGGGAGCTAGGGGAGGTCAAGAAGGAGAATCAACAGAAGAGTAGAGATTGTCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTGGCATTTGCCATTGAGGGGCAAGTGAAAGAGAAAAGTAGGTGGTTTTCGTCACTGAGAGATTTAACAAGGAAATTGAAGATTTTGAAAATGGAACACATGAAGCTATTAGAAGAAGCTGAGGAAAGCAAAAACTATCAAGCAGATATGAAAGAAATGGGGCATATTATCAGGTCCAAAATAAATGAGCAACTGGAGTCCCTTGAAGATCTCAAATCCAAATATGCTGAAGGAGTTAAGGAACGGAAAGAGCTTTACAACAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAATGCTGAAGAGATAGCCGCAGGAGCAACCATGGCCTTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGAGCTCCTAAAAAGACTTTCAAGTTCGATGCTGTCTTTGATCCCCAAGCTGAACAAGCTGATATTTTTGAAGACACAGCACCGTTTGCGACATCAGTTTTAGATGGATTCAACGTATGCATTTTTGCATATGGACAGACTGGAACAGGAAAAACTTTCACAATGGAGGGCAGTGAAGAGGCTCGAGGTGTAAACTTTAGGACTCTCGAAAAAATGTTCGACATAATCAAGGAGAGACAAAAGTTTTATTGTTATGATATTTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTGCAGGAAATCATCAAGGTGCAGCTGCAAAAAGACTTGAAATAAGGCAAGCTAGTGAAGGAATACATCACATTCCAGGGTTGGTTGAGGCACGTGTTAGCAATATGACTGAAGTCTGGGAAGTCCTACAAACTGGAAGCAATGCGAGGGCAATAAGCTCAACCAATTCCAATGAGCATAGCAGTCGATCACACTGCATTCACTGTGTTATGGTTAAGGGAGAGAATTTGTTGAATGGGGAATGCACGAGAAGCAAGCTATGGTTGGTGGATCTAGCGGGCAGTGAACGAGTGGCAAAGACAGAAGTTCATGGTGATAGATTGAAGGAGACACAGAATATTAACAGGTCTCTGTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACGAAAAGTTCACACATCCCATTCAGGAACTCTAAGCTTACACACTTGTTGCAAGACTCATTAGGAGGAGATTCAAAAGCACTCATGTTTGTACAGATCAGTCCTAATGAAAACGATTTAAGTGAGACAATTTGCTCTCTTAACTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGCCCCGCAAGAAAGCATTTGGACACTGTTGAGCTTTTGCGACACAAACAAATTGCTGATAAAGTTAAACAAGAGATAAAGATGAAGGATATGCAAATCAAGAAGATGGAGGAAACAATCCATGGATTAGAGTACAAGATGAAGGAAAGAGATATCAGAAACAAAAATCTGCAAGAGAAGGTCAAGGAACTGGAATCACAGCTTCTGATTGAAAGAAAGTTGGCACGTCAACATGTAGACTCAAAGATAGCTGAGCAGCACCAAATGAAACATCAAGAAGAGCAAAATAATGCACTTATGAGATCAGCACTTGCAAATCGACCTCTAGGAAGTCTTAAGAATTTCAATGATTCAGTGAGTGGTGGATGGTGCAAAGACCAACAAATTAATTCTGCTAAACCACTCACAGAGAACAACCTCATTAAAACTTTTATGCCCTTTGCTACAATGGAGAGCTCCATCAAGTGCATTGACCATGCTGAGAAAGAAAACAATCCTGACATGGCTGAAAAAACCCTACTGCCAAAGAGGCCTGGAAGAGCTTCTTCCATCTGCATGATGGCACCACGTGTTCCTTCAGCCATTGCTTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATTCCTAGCTTAACACAGTTCCAATCACCACTGTTACCAAATTTAACAAACCAAGTTGACAAGAAAGATGTCATTGGGGAAGTAGAAACAAATTGTGTTCCTGCACAGACCCATTGTGAGAGTCCCAAAGAAGTTAGAAGTGGTGCTAAGAGGATAGGTAGCATACTAAGAAGAAGCCTTCATAAGAAAATCCAAGTGAAGTCTCCACTTCAGCACATGAGGAAGGTTGGTGTAAATGTTGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGTAGATTGGCACCAAGGGGGCAAATAGGTTGTAGAAAAGGAGGAACTAGAGATATTCAACCAAAGAACAGTCAAAAGGAAAAGGAAAGGGGGTGGATCTGA 3129 0.4215 MEDTNQCRRYDHDPLLLTDISLPQESSSYTRCSNSLSQTSLSSRSLAMEDVLVCGDSASIGFSRENGGLEGNTMKFDDPIVKDVFDGRSILGYSLASPDLVICGGSPDIAGISCCDSPEFLKNQYYKNVESSIELSLEYGIKGSQVEVDNGPKMPTVKFSNFCQTFEQEEELLSPESSFELLPPLLTKDEAPHDSPPRDAEMIEDNGVSEEAELEFSEDADDLGVEEKLKRLKRDFECQRKELAETRRELGEVKKENQQKSRDCQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRKLKILKMEHMKLLEEAEESKNYQADMKEMGHIIRSKINEQLESLEDLKSKYAEGVKERKELYNKVLELRGNIRVFCRCRPLNAEEIAAGATMALDFESAKDGELTVMSNGAPKKTFKFDAVFDPQAEQADIFEDTAPFATSVLDGFNVCIFAYGQTGTGKTFTMEGSEEARGVNFRTLEKMFDIIKERQKFYCYDISVSVLEVYNEQIRDLLVAGNHQGAAAKRLEIRQASEGIHHIPGLVEARVSNMTEVWEVLQTGSNARAISSTNSNEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPARKHLDTVELLRHKQIADKVKQEIKMKDMQIKKMEETIHGLEYKMKERDIRNKNLQEKVKELESQLLIERKLARQHVDSKIAEQHQMKHQEEQNNALMRSALANRPLGSLKNFNDSVSGGWCKDQQINSAKPLTENNLIKTFMPFATMESSIKCIDHAEKENNPDMAEKTLLPKRPGRASSICMMAPRVPSAIASRRNSLIPLPSIPSLTQFQSPLLPNLTNQVDKKDVIGEVETNCVPAQTHCESPKEVRSGAKRIGSILRRSLHKKIQVKSPLQHMRKVGVNVGMEKVRVSIGSRGRLAPRGQIGCRKGGTRDIQPKNSQKEKERGWI* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2320 1042 Coils Coil 729 749 - -
Vra5g2320 1042 Coils Coil 355 375 - -
Vra5g2320 1042 CDD KISc_C_terminal 380 710 - -
Vra5g2320 1042 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 218 1025 - -
Vra5g2320 1042 Coils Coil 226 263 - -
Vra5g2320 1042 PRINTS Kinesin heavy chain signature 456 477 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 PRINTS Kinesin heavy chain signature 578 595 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 PRINTS Kinesin heavy chain signature 609 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 PRINTS Kinesin heavy chain signature 658 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 Coils Coil 306 326 - -
Vra5g2320 1042 MobiDBLite consensus disorder prediction 1028 1042 - -
Vra5g2320 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 746 IPR027417 -
Vra5g2320 1042 SMART kinesin_4 380 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 Pfam Kinesin motor domain 388 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 ProSiteProfiles Kinesin motor domain profile. 382 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g2320 1042 ProSitePatterns Kinesin motor domain signature. 608 619 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra5g2320 1042 MobiDBLite consensus disorder prediction 1013 1042 - -
Vra5g2320 1042 Gene3D Kinesin motor domain 324 710 IPR036961 -
Vra5g2320 1042 Coils Coil 757 784 - -
Vra5g2320 1042 PANTHER KINESIN-LIKE PROTEIN KLP-3 218 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2320 Vra-Chr5 29929400 29934681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2320 324 735 Calmodulin-binding Proteins AT5G65930 41.063 4.18e-84 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2320 K10406 - gmx:100817247 1759.58