Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2319 ATGATGGCAGTGGACTATAGTTTTCACTTCCTCAATGGGGTTTACGTGATGATGTTGTTTTGCGTTGGCATTGTAGTTGTGAATTCGGTTAATGAAGAGGGGTTAAGTCTCTTGATGTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTACAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTATATTGCACGGGTTCAGTGGTAACTTGTGTAAAACTTTACCAGCTTAATCTATCTGGCACTTTGGCTCCCACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCCATTCCTGATGGTTTTGTTGACTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCACGGACCCCTTCTGACCCCTATATGGAAAATCACAACACTTAAGAAGCTCTATCTGTGTGAAAACTATATGTATGATGAAGTGCTGGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTAGTCATCTATAGCAATAATTTAACTGGGAGAATTCCCTCTTCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCCGGTCTGAATGCCCTCTCAGGACCAATACCTACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCTATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTCACTACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAACATTAGTAGCTTAGAATTGCTTGCTTTGCACCAAAATTTACTAACTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCCAGTTGAAGAGGCTGTACATGTACACCAACATGCTGAACGGAACAATTCCACCTGAGCTAGGAAACTGCACAAATGCTATTGAGATAGACCTATCTGAAAACCATTTGATTGGGATCATTCCCAAGGAGCTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTGCAGGGTCATATTCCAAGGGAGCTTGGTCAGTTAAGAGTCCTAAGAAATTTAGACCTGTCACTAAATAACTTGACTGGTACAATTCCACTTGAATTTGAAAACCTTACACATATGGAAGATTTGCAGCTATTTGACAATCAACTTGAAGGTGTGATTCCTCCTCGGCTTGGAGCTATTAGGAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGGATATCAGAAGCTACAATTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTTATAGCCTGAAAACTTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCAGCTGACAGGAAGCCTGCCTGTTGAATTGTATGAACTTCACAATCTCACTGCACTTGAACTCTATCAGAATCGATTTTCGGGGATGATAAACCCCGGGATAGGTCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTCGAAGGCTATCTACCGCCTGAGATTGGAAGTTTGAAACAACTTGTCACATTCAATGTTTCCTCTAACCGTTTCAGTGGAAGCATTCCTCAAGATTTGGGAAACTGTATTAGACTGCAGAGGCTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGAAGCCTGGTGAACTTGGAGCTCTTAAAAGTTTCTGATAACGTCCTCTCAGGAGAAATACCAGGCACTTTGGGGAATCTTATTCGGCTCACAGACCTGGAACTAGGTGGCAACCAATTTTCAGGAAGCATCTCTTTTCATTTGGGAAGACTTGCTGCCCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGGTCAATTCCTGATAGTCTTGGGAACTTACAAATGCTAGAGTCCCTTTATCTCAATGACAATCAACTTATTGGTGAGATTCCAACATCAATTGGTGACCTTCTCAGTCTTGTAGTGTGCAATGTATCTAACAACAAGCTAGTAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACGAACTTTGCTGGGAACAACGGTTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCAATATCTTCCTCTCATGCTGCAAAACAAAACTGGATCAGAAATGGTTCCTCGAGGGAAAAAATAGTGAGCATTGTTTCTGGGGTTGTAGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCGACGTGGCCATGATGCTTTTGTCTCACTTGAAGGGCAAACTAACACTCATGTCTTGGATAACTACTACTTTCCTAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAAATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTGTACAAGGCTATTATGAGTGATGGTGAAGTGATTGCTGTAAAAAAGCTGAATTCGCGAGGAGAAGGAGCAAATAATGTTGACAGAAGCTTCCTTGCCGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCCTATATGAATACATGGAAAATGGAAGCCTTGGTGAACAACTTCATTCAAGTGCAATCACCTGTTCACTGGATTGGAGTAGTCGATATAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGATTGCAAACCTCAAATTATTCACCGTGACATAAAGTCCAACAACATATTACTTGATGAGGTCTTTCAGGCTCACGTTGGAGACTTTGGCTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCTGGTTCCTATGGCTACATTGCCCCAGAATACGCTTACACGATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACCTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGTGCTCCAAAGACAGTTGAAGAAATGTCTCTTATTCTCAAGATTGCCCTGTTCTGTACCAGCACGTCTCCACTTAATAGGCCTACTATGAGAGAGGTCATTGCAATGTTGATTGATGCCAGGGAATATGTCAGCAACTCACCAACCTCTCCTACATCAGAGTCTCCATTGGATGAGGATGATGGCATTTCTTCCAAAGATGATGGTGCTGATTTGTAA 3348 0.4214 MMAVDYSFHFLNGVYVMMLFCVGIVVVNSVNEEGLSLLMFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTCVKLYQLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFVDCGSLEVLDLCTNRLHGPLLTPIWKITTLKKLYLCENYMYDEVLEELGNLVSLEELVIYSNNLTGRIPSSIRKLKQLRVIRAGLNALSGPIPTEISECESLEILGLAQNQLEGSIPRELQKLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNLLTGGVPRELGKLSQLKRLYMYTNMLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNNLTGTIPLEFENLTHMEDLQLFDNQLEGVIPPRLGAIRNLTILDISANNLFGMIPLHLCGYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFSGMINPGIGQLRNLERLLLSANYFEGYLPPEIGSLKQLVTFNVSSNRFSGSIPQDLGNCIRLQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNVLSGEIPGTLGNLIRLTDLELGGNQFSGSISFHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLIGEIPTSIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTSHCHPSISSSHAAKQNWIRNGSSREKIVSIVSGVVGLVSLIFIVWICLAMRRRGHDAFVSLEGQTNTHVLDNYYFPKEGFTYQDLLEATGNFSENAVLGRGACGTVYKAIMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSAITCSLDWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLDEDDGISSKDDGADL* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2319 1115 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vra5g2319 1115 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Vra5g2319 1115 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515
Vra5g2319 1115 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2319 1115 PANTHER OS07G0152200 PROTEIN 17 1091 - -
Vra5g2319 1115 SUPERFAMILY L domain-like 33 312 - -
Vra5g2319 1115 Gene3D Ribonuclease Inhibitor 406 725 IPR032675 -
Vra5g2319 1115 SMART LRR_typ_2 575 599 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 503 527 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 383 407 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 648 672 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 95 119 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 167 191 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 287 311 IPR003591 -
Vra5g2319 1115 SMART LRR_typ_2 359 382 IPR003591 -
Vra5g2319 1115 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1091 - -
Vra5g2319 1115 Gene3D Ribonuclease Inhibitor 141 232 IPR032675 -
Vra5g2319 1115 Gene3D Ribonuclease Inhibitor 233 332 IPR032675 -
Vra5g2319 1115 MobiDBLite consensus disorder prediction 1088 1115 - -
Vra5g2319 1115 Gene3D Ribonuclease Inhibitor 336 405 IPR032675 -
Vra5g2319 1115 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Vra5g2319 1115 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2319 1115 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2319 1115 Gene3D Phosphorylase Kinase; domain 1 772 884 - -
Vra5g2319 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Vra5g2319 1115 SUPERFAMILY RNI-like 364 687 - -
Vra5g2319 1115 Gene3D Transferase(Phosphotransferase) domain 1 885 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2319 Vra-Chr5 29914147 29919886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2319 52 1084 Receptor kinase-like Gene Family AT1G73080 37.199 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g2319 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2319 - - pvu:PHAVU_005G054300g 2109.34