Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2318 ATGGAAGAACCCACATTATTGTTCCCAGACACAGACCTGGATCTCAGTTTTACCAGCACCACCACCGACCGCACCAGCGCCCGAACCAGCCTCGCCCGAACCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCCACTTGCGAGCCCTCCATCTCAGTCGTAAACCGTCGCCCCCACCGGAGCTCCGACCCCCACTGGTCCGCCATCCAAGCCGCCACCATGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCATCTTAAGCTGCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTCCGCGACTACGACGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGGAAACCGAGGCCGAAATCCTACAAGCACTCGACCATCCCTTCCTCCCCACGCTCTACGCACGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCACAGAACCGCCTCACTCTCTCGGTAGCGCGTTTCTTCGCCGCTGAGGTCCTCGTCGCCCTTGAGTACCTCCACGCGCTCGGAATCGTCTACCGCGACCTTAAACCCGAGAACGTTCTCTTGCGCGAAGACGGCCATGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCTGACGTGGCACCCAGCCTCACACTTAAGACCCACAACAAACCCACTTGTGTGGGCCCCACCGACGGTTGCTTCAGTTGTAACCGTCTTCCCCACAGACAACACCACCAGACGTTCCTTGCAGAGTTCATTGCGGAACCCGTGGCGGCGTTTTCACGGTCTTGCGTTGGCACGCACGAGTACCTAGCGCCTGAGCTTGTCTCGGGTAACGGTCATGGTAACGGCGTTGACTGGTGGGCTTTTGGGGTTTTCCTCTACGAGTTGCTGTACGGGACAACGCCGTTTAAGGGCTCCAACAAAGAGAACACACTGCGCAACATAGCGTCGTATAAGGACGTGAGATTCGTGCACTTGTCGGAAGGAGAAGAGCCTGGTATGACTGAGGCTAGAGATTTGATTGAGAAGCTGTTGGTGAAGGATCCAAGGAAGAGGCTAGGGTGCGCCAAGGGTGCCACTGATGTTAAACGACACCCATTTTTTGACGGCATTAAGTGGCCCTTGATTAGAACTTACCGGCCACCGGAAGTGAAGGGGATGGTGAGAAGGAACAGGTCGCACGTGAGTGGTCACGTGAGTTACAGGAGGAAGAGGTGGTCGTGGAAGAGACTTTCCCATGTCCTTCGGAAATGTAATTTGATTTCAAACTATAGTAATAATAATAACAATTATTATCACTATGTTGATAGTTATAAGGTTAATTAG 1410 0.5582 MEEPTLLFPDTDLDLSFTSTTTDRTSARTSLARTSSLTLSFNDRISTCEPSISVVNRRPHRSSDPHWSAIQAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILQALDHPFLPTLYARIDVSHYTCLLIDYCPAGDLHSLLRKQPQNRLTLSVARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLTLKTHNKPTCVGPTDGCFSCNRLPHRQHHQTFLAEFIAEPVAAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFLYELLYGTTPFKGSNKENTLRNIASYKDVRFVHLSEGEEPGMTEARDLIEKLLVKDPRKRLGCAKGATDVKRHPFFDGIKWPLIRTYRPPEVKGMVRRNRSHVSGHVSYRRKRWSWKRLSHVLRKCNLISNYSNNNNNYYHYVDSYKVN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2318 469 PANTHER FLIPPASE KINASE 1-RELATED 9 429 - -
Vra5g2318 469 SUPERFAMILY Protein kinase-like (PK-like) 62 423 IPR011009 -
Vra5g2318 469 ProSiteProfiles Protein kinase domain profile. 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2318 469 SMART serkin_6 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2318 469 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Vra5g2318 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vra5g2318 469 Gene3D Transferase(Phosphotransferase) domain 1 289 410 - -
Vra5g2318 469 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 9 429 - -
Vra5g2318 469 CDD STKc_phototropin_like 94 412 - -
Vra5g2318 469 Pfam Protein kinase domain 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2318 469 Gene3D Transferase(Phosphotransferase) domain 1 171 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2318 Vra-Chr5 29894893 29896635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2318 1 463 AGC Kinase Gene Family AT3G14370 65.900 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra5g2318 Pkinase 1.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2318 - - gmx:100778383 677.552