Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2292 ATGACAGCTACAACCACAAGTCATGATAAAGACGTGCCTCATTGCTATGAACATGGTGCTGAGCCTAATGAAATGTTTATAGACAACGAACCTAGGATAAATATGTGTTTTGAATCACTGGAAGATGCCAAAAATTTCTACACAAATTACGCCATTACATGTGGTTTTGCTGTAAGGACAAGATCATCAAAGAAGGATAACAACAATAATGTGTACTATTTGCGATTAGTTTGTTCTAGAGAAGGCAAATATGTGTCTTCCATTAAACCAGAGGTGAAAACACATGCATGTCAAACAAATCAACGTCCAGCTAGCATTACCATTGGAAGGAAAGATAGTTATTGGGTTATAAAGAGCGTCGTGTTAGATCACAGTCATGAACTATGCCCTAATACATCTAAGTTGATTCCTGGGAATAGAAAAATTAGCATGCAAGCTAAGCATACGTTGGAAGTCAACGATGATGCGGGCGTTCGCATTAATAAGAGTTTCCTTAGCATTGTTAGTGATGTTGGTGGATTTGAGAATATGGATTTCGTAGAACGTGATGCACGGAACTACATTATGCAACACAGAAAATCTTTATGTAAGGACGGTGATGGTCAAGCCCTTTTAAAACACTTTTCATCCATGAAAGCATTGAACAACGACTTCTTCTACGACATTGCATTGGATGAAGGGAATAGAATATGTAGTGTGTTTTGGGCAGACGCAAGAAGTATAGCAGCTTGTCAAGAATTTGGTGATGTTGTGTCGTTTGACACCACTTACTTGACAAATAAGTATGACATGCCCTTTGCGCCATTTGTAGGCGTTAACCATCATGGTCACTCAATTTTACTTGGATGTGNTTTGCTTTCTTCCGAAGACACTGCATCCTTTGTNTGGTTGTTTGAATCTTGGTTGAGATGCATGGNAAATAAGGCCCNAATAGCCATTATAANGGATCAATGNAGGGCAATGGCGAATGCCATTGAAGAGGTTTTCCCAAATACCAGACACAGATGGTGTNTATGGCACATAATGAAGAAGTTGCCTGAAAAATTTCAAAGCTACAAAAATTACGTTGCCATTAAAGCGGATATACATGCGCTCATCTATGACTGTGGGTCGCCAAGCGAGTTTGGGATAGAATGGGAAGAACTTCTTACAAAGCACAGATTGGAAGGGAATGACTGGTTAAGTAATCTTTATGAGGAAAGAATGAAATGGGTTTCATGTTATTTAAGGAGTCAATTTTGGGCAGGTATGTCAACAACACAACGAAGTGAGGGTATGAATGCCTCTTTTGATGGGTTTATAAATTCAAGCACGACACTACATCAGTTTGTGGTTCAATTTCACAATGCACTTAGGGTTAAGGCACAAAAAGAAACACAGGCTGACTTCTCCTCCCTAAACACCACAATTGGTTGTGGGTCCCAATCACCGATAGAAAGACAATTTCAATTGGAGTATACACATGAAAAGTTTGAGGAAGTCCAAACAGAATTTCGATGTCGGATGAATTGCTTTATAAAAAACACTGTAAAAGACACCCTTATGAATACTTACACAATAAAAGAGGAGCGAATGTTTGAGGTATTTGGTCAAGAAGATGTTTGCAATGTGCCATCCAAATACGTCCTTCGGCATTGGAGTAAGAATGTTCGTAGAAGACACACCCTGATTAGAGCAGCCTATAATACCTCTAAGCTTCAACCGACGATGCAAAGATACCAGGTTTTGTGTAAAAAAATTTTTGAAATAGCAGAGGTCGCTTGTGAGTCTGAACATGTTTCTGATCACTTGGAAAAAGATCTTGATGAATCTACAGTTCCTGATGTTGTACAAAGTGTTGAGGTCATTCAAGTTGCATCCCAAAGTTACCAATTTTCAGACCAATCCGCATTGGCGCCATCTGGATTTATGTCTTTGTTATCTGCTGTGCATAACACTTTTGACAATAACATACTTTGA 1959 0.388 MTATTTSHDKDVPHCYEHGAEPNEMFIDNEPRINMCFESLEDAKNFYTNYAITCGFAVRTRSSKKDNNNNVYYLRLVCSREGKYVSSIKPEVKTHACQTNQRPASITIGRKDSYWVIKSVVLDHSHELCPNTSKLIPGNRKISMQAKHTLEVNDDAGVRINKSFLSIVSDVGGFENMDFVERDARNYIMQHRKSLCKDGDGQALLKHFSSMKALNNDFFYDIALDEGNRICSVFWADARSIAACQEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCXLLSSEDTASFVWLFESWLRCMXNKAXIAIIXDQXRAMANAIEEVFPNTRHRWCXWHIMKKLPEKFQSYKNYVAIKADIHALIYDCGSPSEFGIEWEELLTKHRLEGNDWLSNLYEERMKWVSCYLRSQFWAGMSTTQRSEGMNASFDGFINSSTTLHQFVVQFHNALRVKAQKETQADFSSLNTTIGCGSQSPIERQFQLEYTHEKFEEVQTEFRCRMNCFIKNTVKDTLMNTYTIKEERMFEVFGQEDVCNVPSKYVLRHWSKNVRRRHTLIRAAYNTSKLQPTMQRYQVLCKKIFEIAEVACESEHVSDHLEKDLDESTVPDVVQSVEVIQVASQSYQFSDQSALAPSGFMSLLSAVHNTFDNNIL* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2292 652 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 528 594 IPR031052 GO:0006355
Vra5g2292 652 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 523 IPR031052 GO:0006355
Vra5g2292 652 Pfam MULE transposase domain 250 344 IPR018289 -
Vra5g2292 652 PANTHER OS03G0843700 PROTEIN 11 523 - -
Vra5g2292 652 PANTHER OS03G0843700 PROTEIN 528 594 - -
Vra5g2292 652 Pfam FAR1 DNA-binding domain 45 129 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2292 Vra-Chr5 29460285 29462703 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g2292 MULE 1.1e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2292 - - vra:106760580 1323.15