Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2290 ATGAGGTTTTCGGGTTACATAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGTTGGACCGCACAGGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCAGTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCACCTCTCCCCGCTGCTTGGGAACGTCGGCCACGGCGACTTAGTTCTCGTTCGGTCCCCTCTCAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTATGCCTCCCGTGACTCACGCCATTTTGGTCCTGTCCCATATGGTCTCATTGAAGGAAAAGTGTTTTTCAGGGAGTTGTGCATAGTCAACATCGCAAAGACATTCGCGAAGCTCCGACATTAA 513 0.5361 MRFSGYIAQWRSAAKEALDRTGITVNFLCWLHFTSNYLCSPVHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRELCIVNIAKTFAKLRH* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2290 170 SUPERFAMILY LexA/Signal peptidase 37 154 IPR036286 -
Vra5g2290 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g2290 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g2290 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g2290 170 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
Vra5g2290 170 Gene3D Umud Fragment, subunit A 35 167 - -
Vra5g2290 170 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 8 155 - -
Vra5g2290 170 Pfam Signal peptidase, peptidase S26 27 104 IPR019533 GO:0004252|GO:0006465
Vra5g2290 170 Pfam Signal peptidase, peptidase S26 113 153 IPR019533 GO:0004252|GO:0006465
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2290 49 154 MADS-box Gene Family AT1G29960 49.533 4.34e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2290 K09647 - csin:114274489 215.698