Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2272 ATGCAGAAACATCAATACAATTCCATGGAATCTAGAACTGAGGAATTCCATTCTGCACAGCAATTGGTCCCTCAAGACCATCGTGATGGCATGCATATCAATGCACGGCCTCCAGCATATAATGTGTCAGAAAATAAACCTGTACTTAACTATTCCATACAGACAGGTGAGGAATTTGCTCTCGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTCCATTTCCAAATGTTGTGGGTGATCCCAACTATTCAACAGGCTATATGGAATTGAAAGGCATTTTGGGACATTCAGGATCTGAGAGTGGATCTGATATATCTGTGCTCACAAAGACTGAAAAGGGTCCTAAAGAGTTTGACAGAAGGAACTCTTCTCAAAACCAGGACAGAAGTAATTATGGTTCAGCTCGATCAATTCCTAGAACTTCATCCAATCAAGAAAGTTACCGAGTCCTTCATGGTACTGCCCCTTCCAGTGCATCTGAAATTTCATCCATGAAGATGAAGGTTCTATGCAGCTTTGGGGGAAGAATATTGCCAAGGCCTAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACGCGTATTATAAGTATAAGAAGGGACATACGTTTGCCGGAGCTTATGCAGAAAACATCATTAATTTATAGTGAACCTCATGTGATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCGTTAGTTTCAGTATCTTCTGATGAGGATCTGCGGAATATGATGGAGGAATGTCATGATTTACAAGGTGAACGAGGATCAACCAAGCTTAGGATGTTTCTGTTCTCTATAAATGATTTGGATGATACTCAGTTTGGCATAGGTAGCATTGACGGTGATTCTGAAATCCAGTACGTAGTTGCTGTTAATGGCATGAGCATGGGTTCAAGAAACAACTCAATTCTTCATGCCGCAGGTGGCTCTACCAATAACTTGCATGAATTGAGTGAACAAAATAATGAGAGGGAGACCAACAGAGTTTTGATGGACTCATTTGGTGTTAGTGGCTCATCTTTGACTGACAATGTTAAATCATCATTGACTATTCAATCTTCACAACAAATGCTTCCAATCTCCTCTAGTGCTTTTGAAACCCATCCATTGTTTTATGATGAACCGGTTATTCACCAAGGGGAAGCTAGTCAATATCCACTACAGCACGGTCTTGGTCCTTCTAACAACTCTGCTCGCAATATTGGAGAGATTCCAGTTTCTGTGCCTATTCAAAGTTTTGTTAACCAAGGGATCATGAATGATGGACAAACATCCAGTGAGTTGCAGGTACAAGTTTCAGCTATGCCAGACATGTTGGTAAAAAGAAAGGGTGATAATTTCATTCATACAGGCAACGATCCAGGAAAAGTTTTCCCCTTGGAAGCACCATATCCTATTGCTTCGCTGCCATTTGAGGGAAATTTGCATGCTAATTTACCAGAGGCACCAGTTACTGCTGCTCTATCAGAAGGGCTTCATCCTGCAGTGCCATCAAAGAACAAGGGTAAGCACCAGCAGTCTGAAGATGCCTATTCATTAATCGGGAGTATGAATCGCACACAGACTCCTAAGTCTGGTGAAGATGATTTCTATACTACACCCACTGATGCATTCGGCCGTGCTCAGGTTGATGCTGAGTCCAATGTGATTGATTTCGGTAGCCTTGAACCACCTCCACTTCCCAACAGAGTCTATTATTCAGAGAGAATTCCAAGGGAGCAGGAAGATTTGCTGAATCGATCTACTAAGTCAGATGATGCGTATGGTTCTCACTTACTCATGTCCGATTTGCTTTCTGACTTCAGCCAGAAGAATTCAGAAACAGAATCCAGTGACATATTGCACGGTGGGAATATGTCAAATCAGAACATTATGTCCAGATCGGCACCAAAGCCTTTGCAAGTAGATGGCAATACCATTGATGATGGATTTGCCCCACCGCCAACATACAAACAGTGGCCTGATGCAACAAATAAGTTGAATTCAAAGTTATCATTGCCTGTGAATTCTGAGTTGAAGCAAGTGTTAGTAGATAATAAGGTTACTGGAATTGAGGACCAGATCCTTCATTCTGGAAATGATGCCAATCGTTCCAAAGACAACCATAACATCCTCTTAGTTGATGGACCCAAAGGTACTGGACATCTGGCTTTTCATCAGGTTCTTCCAGTTGATCATAATCTGAACGTAGTATCTAAACCTCCAGACCTCAATTTGGTTGAAGTTTCTACCAGGGAATTGGATAACGGTAAGGTCCAAGCTGTGTCTTTTCCTTCAACTGGAAACACAGGCCAAGATGATTCTCAAAATTTCCCCCCAGAAGTTAAACCAAGACCTACTGCTCAGGGAGACATTCTTATTGATATTGAGGACAGGTTTCCCCGTGATATCCTTCATGATATGTTCTCCAAAGCAATACTTTCCGAAGATTCATCAAGTAATGGTCCGTTACCAGCAGATAGAGCAGGTTTGAGCTCACACATGGACAATCATGAGCCTAAACGTTGGTCATATTTTCAGAACTTGGCCCAAGAGGGGTTTGATAATGTTTCTCTAATTGATCAGGACTATCTTGATTTTTCGTCTGCAGTGAGTAAAGTTCCAGATGGGGATAGTAATTCTCAGCAGTCTGCTGCTCTACTGGCAGATGGTGCTTTGGCAGGACACAAGGAATCTCACCTAAATTTCGGTGGTGACGAAAATCAGAAAAATGTACCTGTAACAACTAAAACAGAATCAACTCTCCTTCAACCAAAATATGAGCATTCCCAGCTAAAGGGCAATGAAAATAAGAACATGGACACCATAATGGAAAACATAAGACCACAGGAATCTGAATACCTGGAGGATGACCAGAATGAAGAAAGGAATGTGGATTTGGCAGGGACTTTTGACATCAGTACTGTGCAGTTCATAAAGAATGATGATCTTGAAGAGCTGCGAGAGCTGGGTTCTGGTACCTTTGGGACTGTGTACCATGGAAAGTGGAGGGGATCGGATGTTGCTATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTAGATCTTCAGAACAAGAGAGACTGACAATAGAGTTCTGGCGTGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTTGTGGCATTTTATGGTGTAGTCCAGGATGGACCAGGAGCAACATTAGCCACTGTCACTGAGTACATGGTGGATGGTTCTCTCAGGAATGTTTTGCTTCGTAAGGATAGATATCTTGATCGCCGTAAGAGGTTGATAATAGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCCTATCAAAAATTAAGCGAAACACCCTTGTTTCTGGTGGTGTTCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTAAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTCGGCATAGTCTTATGGGAGATTCTTACTGGTGAAGAGCCATATGCTAATATGCACTATGGTGCAATTATTGGAGGTATTGTGAATAACACATTGAGACCTACAATTCCCAGTTATTGTGATCTTGAATGGAAAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCAGTTAGGCCATCCTTCACAGAAATTGCTCGTCGTCTGCGTGTGATGTCTGCAGCTGCTATTCAGAACAAGGGACAGGTCCACAAGGCTTCTAAATGA 3789 0.4217 MQKHQYNSMESRTEEFHSAQQLVPQDHRDGMHINARPPAYNVSENKPVLNYSIQTGEEFALEFMRDRVNLRKPPFPNVVGDPNYSTGYMELKGILGHSGSESGSDISVLTKTEKGPKEFDRRNSSQNQDRSNYGSARSIPRTSSNQESYRVLHGTAPSSASEISSMKMKVLCSFGGRILPRPSDGKLRYVGGETRIISIRRDIRLPELMQKTSLIYSEPHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQGERGSTKLRMFLFSINDLDDTQFGIGSIDGDSEIQYVVAVNGMSMGSRNNSILHAAGGSTNNLHELSEQNNERETNRVLMDSFGVSGSSLTDNVKSSLTIQSSQQMLPISSSAFETHPLFYDEPVIHQGEASQYPLQHGLGPSNNSARNIGEIPVSVPIQSFVNQGIMNDGQTSSELQVQVSAMPDMLVKRKGDNFIHTGNDPGKVFPLEAPYPIASLPFEGNLHANLPEAPVTAALSEGLHPAVPSKNKGKHQQSEDAYSLIGSMNRTQTPKSGEDDFYTTPTDAFGRAQVDAESNVIDFGSLEPPPLPNRVYYSERIPREQEDLLNRSTKSDDAYGSHLLMSDLLSDFSQKNSETESSDILHGGNMSNQNIMSRSAPKPLQVDGNTIDDGFAPPPTYKQWPDATNKLNSKLSLPVNSELKQVLVDNKVTGIEDQILHSGNDANRSKDNHNILLVDGPKGTGHLAFHQVLPVDHNLNVVSKPPDLNLVEVSTRELDNGKVQAVSFPSTGNTGQDDSQNFPPEVKPRPTAQGDILIDIEDRFPRDILHDMFSKAILSEDSSSNGPLPADRAGLSSHMDNHEPKRWSYFQNLAQEGFDNVSLIDQDYLDFSSAVSKVPDGDSNSQQSAALLADGALAGHKESHLNFGGDENQKNVPVTTKTESTLLQPKYEHSQLKGNENKNMDTIMENIRPQESEYLEDDQNEERNVDLAGTFDISTVQFIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRNVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAIQNKGQVHKASK* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2272 1262 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g2272 1262 Pfam Protein tyrosine and serine/threonine kinase 981 1243 IPR001245 GO:0004672|GO:0006468
Vra5g2272 1262 Gene3D Phosphorylase Kinase; domain 1 967 1066 - -
Vra5g2272 1262 PRINTS Tyrosine kinase catalytic domain signature 1062 1075 IPR001245 GO:0004672|GO:0006468
Vra5g2272 1262 PRINTS Tyrosine kinase catalytic domain signature 1099 1117 IPR001245 GO:0004672|GO:0006468
Vra5g2272 1262 PRINTS Tyrosine kinase catalytic domain signature 1170 1192 IPR001245 GO:0004672|GO:0006468
Vra5g2272 1262 PRINTS Tyrosine kinase catalytic domain signature 1214 1236 IPR001245 GO:0004672|GO:0006468
Vra5g2272 1262 ProSitePatterns Protein kinases ATP-binding region signature. 986 1011 IPR017441 GO:0005524
Vra5g2272 1262 SMART PB1_new 182 269 IPR000270 GO:0005515
Vra5g2272 1262 MobiDBLite consensus disorder prediction 812 831 - -
Vra5g2272 1262 SUPERFAMILY Protein kinase-like (PK-like) 970 1242 IPR011009 -
Vra5g2272 1262 PANTHER SERINE-THREONINE PROTEIN KINASE 81 1262 - -
Vra5g2272 1262 SUPERFAMILY CAD & PB1 domains 183 275 - -
Vra5g2272 1262 ProSiteProfiles Protein kinase domain profile. 980 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2272 1262 Gene3D - 186 269 - -
Vra5g2272 1262 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 81 1262 - -
Vra5g2272 1262 Gene3D Transferase(Phosphotransferase) domain 1 1067 1262 - -
Vra5g2272 1262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1105 1117 IPR008271 GO:0004672|GO:0006468
Vra5g2272 1262 MobiDBLite consensus disorder prediction 95 158 - -
Vra5g2272 1262 MobiDBLite consensus disorder prediction 759 783 - -
Vra5g2272 1262 CDD PB1_UP2 171 267 - -
Vra5g2272 1262 MobiDBLite consensus disorder prediction 759 773 - -
Vra5g2272 1262 MobiDBLite consensus disorder prediction 126 158 - -
Vra5g2272 1262 MobiDBLite consensus disorder prediction 111 125 - -
Vra5g2272 1262 SMART serkin_6 980 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2272 1262 Pfam PB1 domain 184 267 IPR000270 GO:0005515
Vra5g2272 1262 CDD STKc_MAP3K-like 986 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2272 Vra-Chr5 29014021 29023434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2272 34 618 MAP Kinase Kinase Kinase AT1G16270 38.679 4.06e-96 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra5g2272 PK_Tyr_Ser-Thr 5.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2272 - - var:108333936 2442.92