Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2271 ATGGAATCTAGACTTGATGAATGGCACCAGTCTCGATCACAGCCAGTTATGCAGGACCATTTGGATGGCCCGCATACCCATAGAAGACAAGTTGACTTCAATACATCAGAAGTTAAACCTGTACTTAATTACTCTATACAGACAGGTGAAGAATTTGCTCTTGAGTTTATGAGAGATAAGGTGAATATGAGTAAGCCTGTATTATCAAATGTTAGTGAATCGAATTATACCCCAGGTTATATGGAACTGAAAGGCATTTTAGGTATCAACCATGCAGGATCTGAAAGTGGATCTGATATCTCTATGTTCTCAATGGCTGAGAAATATCCAAAAGATTTTGATACAACGAGTACATCTTTACCTGGAGACAGAATCAACTATGGGTCTATTCAATCAATGCCAAGAACTTCATTGAATCAGGATAATAGGCAATTTGTGCCTGGGTATGGCTCTTTTGGAGCTTATGATAGATCAATGATCATGAAGTTTCTTTGCAGCTTTGGCGGTAAAATATTGCCACGACCATGCGATGGAAATCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGACTAAGAAAGGACATATCTTGGCTGGAGCTCATGCAGACAGCATTTCAAATCTATAGTCAGGTTTATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACAAGATAGGGAAGGATCACAAAAACCTAGGATGTTTTTGTTCTCAATGAGTGATTTGCAGGATGCTCAATTTGGTCTCAGCAGTATGGGTGATGATTCTGAGATTCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAAAAACACTACGATGATTGGTGTCAGCGTTTCGGCAAATGACATAAATGAATTGGACAGGCAAAGTATTGACAGGGAGACTAATAATAGAGTTGGTATAGAATGTATTGTACAAGGAAATCCTCCCCCAACTAACAATTTAGACTCATCATTGGCTTCTCAATTTTCACCATCAGTGCTACCAACTTCCTCAAATTCATATGAAAAGTATCCACAGTTTTATAGTGATCAAATGATGTGCCATGGCGAACATAGTGATCAATACTTTATTAATGAAGGCCTCGATCTTTCTCATAAACCTGTTATTGGAGAGACCCCGATGATTATGCCTCCCCATATGCTTGTCAATCAACAAGGGATTTTGAATGAAGGCCTTCCTCCTCGAGGAATACAAGTACAAAATTCAGAAATACAAACAACATTGGCAAACAAGATGGTTACTAGTTCAATTCCACAAGTAAGTGACCCTGGGAAAGTTTTGGCCTCAGAATTACCATCACCCGCTCCTGCTCAACTGTTTAATGGTTACATGAAAAATAATTTTCCTGAAGCATCTGTTGTAGTTACTGTGTCAGAGGGGTTTTCATTGCATCCACCAAGCTTGAACAAGGGCCAAGATAATGAAGAGACTTCTTCTACAAGCAGTGCATTTGGTCCTACTTATGTTGATTCCCACTCCAATGCTTCTGACTTGAGTTCCCTTCATCCTCCTCCTCTTCCTAAGAGAGTTTACTATTCAGAGAGAATTCCACGCGAACAGGTAGAGTTGCTGAACCGGTCCTCAAAATCTGATGATACACACAGCTCTCAGTTTCATGTTCCAGATTTACTCTCTGATATCAACCCACCCAATTTAGTTACAGAATCTGTTGACAAGTTGCATGATGGAAATCTATCTGATCTAAATGAGGAATTAAGCATCACAGAAAATCCGTTGCATGCAAATGTATTTTCAGTTGATAATGGGATTGTCAATAATCAAATCTACAAACAGCCGCTTGATGCAAACACTATGATAAAATCAAAGCTAACTGAGCATGTGAATCCTGAGCTGAGGCAGGTATTATCGGACAATGAAGGACACACAGATGTGTTAAATAAAGATAATGTTGTTGGGTTGGAAATGAAAATTAATGGTAACAATAGCTATAACAAACCCCTGATTGATGAGACAAAAGCCAGTAAACCTGACTTGGAGAATTTGCACCATGTTTCTTCTCGTAAGAATCTTGATGATCCTGCATCCACTCTTCCAGAGGTTGACTGGGGTGATACCTCTGTGAAAGAGTCTAATGACAATGTTAATGTGCAAGCCTTACCTGGATCTCTAAATGGGAATATTGATGATGATTCTGAAGAATTTCCATCTGATGTCATCATGAAACAAGCACATGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGACCCCTCTAGTTTCCATAAATTAACTTCAAATGGAGTGGGCTTAAGTGTAAACATGGAAAATTGTGATCCTAAACGATGGTCGTATTTTCAAAAATTGGCTCAAGCAGGCATTGATAATGTGTCTCTTATTGACCAAGATCATCTTGGGTTTGCACCTGCGATAGGAAAAGTGGTTGGAGATGATAGAGCTCAACATGTTACACCTTTAGCAACTGATGAAGTTTCTCTGAACCATACAGAGTCCCACCTCGATTTTGTTGAAGAAAATTTGCTTGGAAGAATTGGAGGAGAAAGAAAGTCTAACTATGACCATTCCCAAGTGAATGACACTGAAAGCATGCAATTTGATGCTATGATGGAAAACATAAGAGCTCAAGAGTCAGAATGCGAGGTTGGGATGTTTGAAAAAAGGAATAACAATCTAAATCCTCCTGATCCTTCTTTGGGAGAGATTGATACGAGTTCTTTGCAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACCTTTGGCACCGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCCATCAAAAGAATAAAGAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCCGATATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGGAGGATGGACCCGGAGGAACAATGGCTACTGTTACAGAGTACATGGTGGATGGTTCTCTTAGGCATGTGTTACTTCGCAAGGATAGGTATCTTGATTTTCGTAAGAGACTGATAATTGCAATGGACGCAGCTTTTGGGATGGAATATTTACACTCAAAAAATATTGTACACTTTGACCTAAAATGTGACAATTTGTTGGTGAACTTGAAAGATCCTATGCGGCCTATTTGCAAGGTTGGGGATTTTGGATTATCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGAGGGGGACTCTTCCTTGGATGGCACCAGAGCTTCTGAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTGTTATGGGAGATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGACCAACAATACCAAATCATTGTGATTCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCGGCTAGGCCCTCCTTCACAGAAATAGCTCGACGATTGCGCATAATGTCTGCAGCTGCTAAATCATCGGGCCAAAAAGCATCTAGATGA 3693 0.4013 MESRLDEWHQSRSQPVMQDHLDGPHTHRRQVDFNTSEVKPVLNYSIQTGEEFALEFMRDKVNMSKPVLSNVSESNYTPGYMELKGILGINHAGSESGSDISMFSMAEKYPKDFDTTSTSLPGDRINYGSIQSMPRTSLNQDNRQFVPGYGSFGAYDRSMIMKFLCSFGGKILPRPCDGNLRYVGGQTRILRLRKDISWLELMQTAFQIYSQVYAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLQDREGSQKPRMFLFSMSDLQDAQFGLSSMGDDSEIQYVVAVNGMDLGSRKNTTMIGVSVSANDINELDRQSIDRETNNRVGIECIVQGNPPPTNNLDSSLASQFSPSVLPTSSNSYEKYPQFYSDQMMCHGEHSDQYFINEGLDLSHKPVIGETPMIMPPHMLVNQQGILNEGLPPRGIQVQNSEIQTTLANKMVTSSIPQVSDPGKVLASELPSPAPAQLFNGYMKNNFPEASVVVTVSEGFSLHPPSLNKGQDNEETSSTSSAFGPTYVDSHSNASDLSSLHPPPLPKRVYYSERIPREQVELLNRSSKSDDTHSSQFHVPDLLSDINPPNLVTESVDKLHDGNLSDLNEELSITENPLHANVFSVDNGIVNNQIYKQPLDANTMIKSKLTEHVNPELRQVLSDNEGHTDVLNKDNVVGLEMKINGNNSYNKPLIDETKASKPDLENLHHVSSRKNLDDPASTLPEVDWGDTSVKESNDNVNVQALPGSLNGNIDDDSEEFPSDVIMKQAHGDILIDINDRFPREFFTDIFSKAVLEEDPSSFHKLTSNGVGLSVNMENCDPKRWSYFQKLAQAGIDNVSLIDQDHLGFAPAIGKVVGDDRAQHVTPLATDEVSLNHTESHLDFVEENLLGRIGGERKSNYDHSQVNDTESMQFDAMMENIRAQESECEVGMFEKRNNNLNPPDPSLGEIDTSSLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVEDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDFRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDSEWRTLMEQCWAPNPAARPSFTEIARRLRIMSAAAKSSGQKASR* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2271 1230 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1076 1088 IPR008271 GO:0004672|GO:0006468
Vra5g2271 1230 SUPERFAMILY Protein kinase-like (PK-like) 937 1214 IPR011009 -
Vra5g2271 1230 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g2271 1230 ProSitePatterns Protein kinases ATP-binding region signature. 957 982 IPR017441 GO:0005524
Vra5g2271 1230 Gene3D Transferase(Phosphotransferase) domain 1 1039 1230 - -
Vra5g2271 1230 SMART serkin_6 951 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2271 1230 MobiDBLite consensus disorder prediction 493 528 - -
Vra5g2271 1230 CDD PB1_UP2 164 260 - -
Vra5g2271 1230 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 75 1230 - -
Vra5g2271 1230 PANTHER SERINE-THREONINE PROTEIN KINASE 75 1230 - -
Vra5g2271 1230 PRINTS Tyrosine kinase catalytic domain signature 1033 1046 IPR001245 GO:0004672|GO:0006468
Vra5g2271 1230 PRINTS Tyrosine kinase catalytic domain signature 1070 1088 IPR001245 GO:0004672|GO:0006468
Vra5g2271 1230 PRINTS Tyrosine kinase catalytic domain signature 1141 1163 IPR001245 GO:0004672|GO:0006468
Vra5g2271 1230 PRINTS Tyrosine kinase catalytic domain signature 1185 1207 IPR001245 GO:0004672|GO:0006468
Vra5g2271 1230 SUPERFAMILY CAD & PB1 domains 177 266 - -
Vra5g2271 1230 MobiDBLite consensus disorder prediction 553 573 - -
Vra5g2271 1230 SMART PB1_new 175 262 IPR000270 GO:0005515
Vra5g2271 1230 ProSiteProfiles Protein kinase domain profile. 951 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2271 1230 Gene3D - 181 261 - -
Vra5g2271 1230 Pfam Protein tyrosine and serine/threonine kinase 952 1214 IPR001245 GO:0004672|GO:0006468
Vra5g2271 1230 MobiDBLite consensus disorder prediction 493 534 - -
Vra5g2271 1230 Pfam PB1 domain 177 260 IPR000270 GO:0005515
Vra5g2271 1230 CDD STKc_MAP3K-like 957 1214 - -
Vra5g2271 1230 Gene3D Phosphorylase Kinase; domain 1 944 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2271 Vra-Chr5 29003616 29011940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2271 34 566 MAP Kinase Kinase Kinase AT1G16270 36.995 2.63e-85 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra5g2271 PK_Tyr_Ser-Thr 1.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2271 - - gmx:100799639 2004.95