Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2269 ATGGATAAATCAGAGGGGACTCCGCAGCGGCAACAGCAGCAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAACCAAATAACCTATTCTCACTACCAGACTGCTCCCGTGGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCTTACCAGCAAGCTCAACATTTCCACCATCAACAACAGCAGCACCAACAACAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGATCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATTAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCGGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCTCTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTCCCTCCACAGCATCCTGTGGGACCTCCTGGGATGATCATGGGAAAGCCAGTTGATCAAGCAGCACTATATTCTACTCAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCCCAGCCACAGCAACCACCCCAACAACAACAACAACAAACAGATTCATGA 816 0.4547 MDKSEGTPQRQQQQQQQHVMGVAAGANQITYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIDQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKASIPLVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYSTQQPRPTMAFMPWPHTQPQPQQPPQQQQQQTDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2269 271 SUPERFAMILY Histone-fold 64 179 IPR009072 GO:0046982
Vra5g2269 271 MobiDBLite consensus disorder prediction 7 21 - -
Vra5g2269 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 11 262 - -
Vra5g2269 271 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g2269 271 Pfam Core histone H2A/H2B/H3/H4 71 170 IPR007125 GO:0003677
Vra5g2269 271 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Vra5g2269 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 11 262 - -
Vra5g2269 271 MobiDBLite consensus disorder prediction 241 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2269 Vra-Chr5 28985280 28988224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2269 86 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 87.692 1.15e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra5g2269 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2269 K08066 - gmx:100796987 401.749