Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2267 ATGCCCCTCTCTCCCTCTTCCATGGCCTCAATCCCACACTTGTATCCAAACTACACCTTCACTACTCACGATCTTTCAGAGTTCCCTACCCCACACATCACTTCCAACGCCTCACTCATCGAGAATACCATCTGGGCTGCTCAAGATACCTTCATTCCTGTGCTTGATATCAACAATGGTGCACTTGATCATATTGTGTCACTGGATTCTGATACCATGCCTTGTGCCAATTGGATGCCTTCCTTCTCTGACCAAGTTGGGGGGCTCTCGGATTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGCGGCTTTCAGAACTTCAACGCCAGATACCAGCCACATATTGGGGACTTTGGAGAAGAATGTTGTGCGTTTCTCGAGGATGTTAAGCCACCTCCATATCCTAATGCTGCAAGAGAAAACTGGGGACTTCAAGGTAATCAAATACAAGCAGTTGAAGAGCCAAACATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTGCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGAGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGATGAAGACATGACATCAAAAAAACACGAGAATCATCATCACCACAAAGAAGACTTCTACGGTGGTGATTCTATCCAGTTCCAGTTAAAGAATGATGAGGAAGATTGGCTGCAAGAGGCTATGGCAAGTCTAGTTTATTTATCTCAGTCTTCACCAGAGGATATGTAA 810 0.437 MPLSPSSMASIPHLYPNYTFTTHDLSEFPTPHITSNASLIENTIWAAQDTFIPVLDINNGALDHIVSLDSDTMPCANWMPSFSDQVGGLSDLAISDCKMGFYGGFQNFNARYQPHIGDFGEECCAFLEDVKPPPYPNAARENWGLQGNQIQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEDMTSKKHENHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSQSSPEDM* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2267 269 PANTHER ACTIVATOR OF SPOMIN::LUC2 8 264 - -
Vra5g2267 269 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 264 - -
Vra5g2267 269 ProSiteProfiles CCT domain profile. 168 210 IPR010402 GO:0005515
Vra5g2267 269 Pfam CCT motif 168 210 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2267 Vra-Chr5 28944578 28946607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2267 164 218 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 2.03e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g2267 CCT 8.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2267 - - vra:106761508 558.14