Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2266 ATGAAAGAGAGTGGCAGAAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACCAGGGATTGTGTCTTTGCTCCTTATTTTCCTGCTCATGAACCCCAGAAGTTTGGTAGTGTCCACAAGGTTTTCGGGGCTAGCAATGTCAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCTCTGCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCAAAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTCTCACCACCATCATCGGATCAACACCACCACCACCACCACCACCAAGCCTCCCTAATGCCTCATGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGCTCTTGTCTTCACAAACCAAGTCCCTTTTTGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG 558 0.4749 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPAHEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAKAEVVHMRMSQFSPPSSDQHHHHHHHQASLMPHEPSNSSSENMFQSSRLLSSQTKSLFGMDMVVDQTIMGQSLWSY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2266 185 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vra5g2266 185 MobiDBLite consensus disorder prediction 140 155 - -
Vra5g2266 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Vra5g2266 185 Coils Coil 92 112 - -
Vra5g2266 185 MobiDBLite consensus disorder prediction 120 155 - -
Vra5g2266 185 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vra5g2266 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2266 Vra-Chr5 28925129 28929305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2266 1 184 AS2 family AT1G31320 64.674 1.54e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra5g2266 LOB 3.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2266 - - gmx:100803188 293.508