Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2261 ATGGCCATGGAAACAACAAGAGTGAGAAAAAGTGTTATGATACTTCTACTCTACCTGACTTTGTCTGCCATTTCTCTCACTCAATGTGATGCAGAAAGATCAATGAAGGTATTAAGAGGTCTCAAAGATAAAAGAAATTCAAGCAAGAACAAAAACCCAAAGAAGTTGAAAACAGTTAAAAAATTAGTTGAGAATCCAACCGTTTTCTCATCAAATGTAGAACCATATAGTCTTAGCTCGCCATTCTCTTTGCCCCCTTATGAATCACTGGCTCCAGAAAACAGCCCTCCATTTTGTGTGTTCCCACCACCAGGCACTCCTCCTTCCACCACCATGCCGTCCCCCACAGGCTTTCAACCCACAACGCCGTCACCACCTGACTTTTACACTTCACCAGTTATCCCAACCCAAAACCCCCCTCCAAATCCCCTAATCATAACACCAGGCCCACCCACTATCACGCCGGGCTCGCCTGAGCCCGTGCTCAATCCTCCCATCATTATCCCAAGTCCACCAGACACCTCAATGGGCCCACCTTACTTCGAGCCCAGCCCACCCTACTTTGAGCCCACCCCACCTTTCATAATCCCTTCCCCCACAGGTGGCATTACCCCAGGCCCACCAACGATAATCCCTTCCCCAACAGAAGGCACTCTCCCAAGCCCACCGAGCACTGTGCCATCCCCAACTGAAGGCAGTGTCCCTGGCCCAGGTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCAAGTGTGCCACCACCTCCGAACTATGCCCCAAGGATCACCTTGTGGTGTGTGGCTAAGCCCTCGGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCCTGCTGGTCTGGAGCAGATTGCACCTCAATTCAGCCCAATGGGCCCTGCTATGAGCCCAATACTGTGTACGCACATGCTTCATATGCTTTTAATAGTTATTGGCAACGGACTAAAGGTGCTGGAGGCAATTGCGAGTTTGGAGGGACAGCCATGCTAGTTGCTGTTGACCCCAGCTTCGATGGGTGTCACTTCATCTACAACTGA 1053 0.5071 MAMETTRVRKSVMILLLYLTLSAISLTQCDAERSMKVLRGLKDKRNSSKNKNPKKLKTVKKLVENPTVFSSNVEPYSLSSPFSLPPYESLAPENSPPFCVFPPPGTPPSTTMPSPTGFQPTTPSPPDFYTSPVIPTQNPPPNPLIITPGPPTITPGSPEPVLNPPIIIPSPPDTSMGPPYFEPSPPYFEPTPPFIIPSPTGGITPGPPTIIPSPTEGTLPSPPSTVPSPTEGSVPGPGVFQPPVVYPPPSVPPPPNYAPRITLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCHFIYN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2261 350 Pfam X8 domain 263 334 IPR012946 -
Vra5g2261 350 MobiDBLite consensus disorder prediction 213 234 - -
Vra5g2261 350 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 195 350 - -
Vra5g2261 350 SMART X8_cls 263 347 IPR012946 -
Vra5g2261 350 Gene3D - 260 346 - -
Vra5g2261 350 MobiDBLite consensus disorder prediction 213 230 - -
Vra5g2261 350 PRINTS Proline rich extensin signature 85 97 - -
Vra5g2261 350 PRINTS Proline rich extensin signature 104 125 - -
Vra5g2261 350 PRINTS Proline rich extensin signature 128 144 - -
Vra5g2261 350 PRINTS Proline rich extensin signature 147 164 - -
Vra5g2261 350 PRINTS Proline rich extensin signature 174 199 - -
Vra5g2261 350 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 195 350 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2261 Vra-Chr5 28833077 28834864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2261 262 347 Glycoside Hydrolase AT3G13560 47.126 9.26e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2261 - - pvu:PHAVU_005G048800g 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2261 5 28833077 28834864 Vra5g2261 5 28833077 28834864 ECH