Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2255 ATGGCTGTGTCACTATGCAGAAGTCGCACTGCTTCATCACTCAATTTGTTTGCCAATACTCTTCGCCGATTCTCTACTGGGGTGACAAACACCAGTGCTCAAAGAACGCCAGAGAGTATAGTGAATCAAATGATGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCAGTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATATTGTTTAATCCAGATGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGGTGTAGGGCCACCATTGGTATTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCCGGACAGAGACGATGGCTTGGTCGTAGACCTGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTGGTGGAAAATGGGGAAGAGGATCTCTCACTCCTTGGGGCAAGCCAACCAAGGGTGGCTATAAGACTGGACCCCTGAAGCGCAGAAGTTAG 597 0.4791 MAVSLCRSRTASSLNLFANTLRRFSTGVTNTSAQRTPESIVNQMMYSDINSRIGSCMPVSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGIVSNPSHGDRKLRKAGQRRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGKWGRGSLTPWGKPTKGGYKTGPLKRRS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2255 198 Gene3D Ribosomal protein L2, domain 3 124 198 IPR014726 -
Vra5g2255 198 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 42 197 - -
Vra5g2255 198 PANTHER RIBOSOMAL PROTEIN L2 42 197 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vra5g2255 198 SUPERFAMILY Translation proteins SH3-like domain 53 188 IPR008991 -
Vra5g2255 198 ProSitePatterns Ribosomal protein L2 signature. 146 157 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vra5g2255 198 Gene3D - 42 123 IPR014722 -
Vra5g2255 198 SMART Ribosomal_L2_C_2 51 184 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vra5g2255 198 Pfam Ribosomal Proteins L2, C-terminal domain 53 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vra5g2255 198 MobiDBLite consensus disorder prediction 152 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2255 Vra-Chr5 28782043 28784401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2255 43 163 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.085 1.74e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2255 - - gmx:100792418 309.301