Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2253 ATGGCGGCACGGAACCTTTGCTGCATGGCACTGCGATCGTCAAAGCTTCTCTCTCGCCCTTCCCATCTTCTCTCTGTTCAGATGCGGACGCAGACGCAGATGCTGTCCTCTTCTCTTCCTCTCATCCGAAAGATGAGCATGGATGCACAGAGTGTTGCTTCCAAGCTTAATAGTTCTGGATTGCTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGACGCTTATGATGGAAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGCAGATGTGGCATGCATGGGTGGAAGAGAGACGAATGATGCAATTTCTGCTGCCTATACTGCATATCGATCATGGAGCAAAACCACTGCTGCTGAAAGAAGCAAATTTTTGAGGAAATGGTATGATTTGCTAATGGCACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAGGGGAAGACTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCTGGATTTATTGAGTTTTCAGCTGAGGAGGCAAAACGTGTATATGGGGATATAATTCCTGCACCTTTATCTGATCGGAGATTGTTTGTTCTTAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTGATAAAACCTTCTGAACTGACACCTCTCACTGCTTTAGCTGCTGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTTGTAATGGGAAATGCTCCTGAAATTGGAGACAGTTTGCTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTAATGGCTGGTTCAGCTGAGACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTTGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGCGTTTGTGCAAATAGAATTATTGTACAAGATGGTATATATGAAAAATTTGCAAATGCACTCCGTGATGCTGTTCTGAATATGAAAGTTGGGGATGGTTTTAGTGAAGATGTGGCACAGGGCCCTCTAATCAATGAAGCTGCTGTGCAAAAGGTGGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACACAGCCTTGGATTTACATTTTATGAACCAACGGTGATCAGTGATGTCAACATTGATATGCGCATATCCAGAGAGGAAGTATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCAAACGACACCAACGCAGGTTTGGGTTCATACGTGTTTACGAACAGTATCCAACGATCATGGCGTGTAGCTGAGGCTCTAGAATATGGACTTGTTGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCTTTCGGTGGTTTTAAACAATCCGGGCTCGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTAGAGATAAAATATGTCTGCATGGGAAACATGAACAAAGAATGA 1620 0.434 MAARNLCCMALRSSKLLSRPSHLLSVQMRTQTQMLSSSLPLIRKMSMDAQSVASKLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIADVACMGGRETNDAISAAYTAYRSWSKTTAAERSKFLRKWYDLLMAHKEELAQLITLEQGKTLKESIGEINYGAGFIEFSAEEAKRVYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDSLLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQDGIYEKFANALRDAVLNMKVGDGFSEDVAQGPLINEAAVQKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVNIDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCMGNMNKE* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2253 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Vra5g2253 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 525 IPR016162 GO:0016491
Vra5g2253 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 59 536 - -
Vra5g2253 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 59 536 - -
Vra5g2253 539 CDD ALDH_F5_SSADH_GabD 83 533 - -
Vra5g2253 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Vra5g2253 539 SUPERFAMILY ALDH-like 60 537 IPR016161 GO:0016491
Vra5g2253 539 Pfam Aldehyde dehydrogenase family 74 531 IPR015590 GO:0016491
Vra5g2253 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Vra5g2253 539 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 83 529 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2253 Vra-Chr5 28736987 28758603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2253 43 539 Aldehyde Dehydrogenase Gene Family AT1G79440 81.087 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2253 K17761 - gmx:100808318 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2253 5 28736987 28758603 Vra5g2253 5 28736987 28758603 ECH