Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2249 ATGTTCTCTGTAGAGAGAGTGTTAGCACAGACCTTAGAGATGGGCCACCGCTGCTGCAGCAAACAGAAGATCAAAAGGGGACTTTGGTCTCCTGAAGAAGATGAAAAGCTTCTCAGATATATCAACACACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTCAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTTCTATCTTCTCATAGAAGAAGCTCCGCATCTACCATCTCCAATATGCATAAAAAATCAAATCCTATCTTCATTATGAGTTCACACACAACAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTCATTACCTAAGCCTCCACTAAACATTGTTCAAACTCCCTCCAGCATTATTACATCTGAATATCAAACATCACCTATTATTTCAAATAAATTCTCGTCAGATTTGCCTTATGAACTGTTAATCGACAACGGCTCCAACATTTGTTCACCTTCATATATGAACCCCACTGCAGTTGAATTGTCGAACAATGAAAACATTGCTAATTGGGTTTCAAGAGTTAATGTTGATGATTTCAGCGGTCAAACACTTGAAGAGGGAACACAAGTGCAGGTGCAGCAAGAGAAGGACAAGTTCTATGAGGATACTGTAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAAAGAAGTGCTTCTTTCGAGAGTTCTAACTTTGATTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTTATCTCTCATGATCTTAGTTGTATGGATGAACTTGCATGGAACTTTTAG 1008 0.3958 MFSVERVLAQTLEMGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKSWSSVPKYAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISNMHKKSNPIFIMSSHTTNAPVETTFQTFSSLPKPPLNIVQTPSSIITSEYQTSPIISNKFSSDLPYELLIDNGSNICSPSYMNPTAVELSNNENIANWVSRVNVDDFSGQTLEEGTQVQVQQEKDKFYEDTVTDVREANKGNLERSASFESSNFDFGLLESVLSSEFISHDLSCMDELAWNF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2249 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Vra5g2249 335 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Vra5g2249 335 CDD SANT 29 73 IPR001005 -
Vra5g2249 335 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Vra5g2249 335 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Vra5g2249 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vra5g2249 335 Gene3D - 23 79 - -
Vra5g2249 335 Gene3D - 81 158 - -
Vra5g2249 335 PANTHER BNAC05G40480D PROTEIN 14 323 - -
Vra5g2249 335 SMART sant 78 126 IPR001005 -
Vra5g2249 335 SMART sant 25 75 IPR001005 -
Vra5g2249 335 PANTHER MYB DOMAIN PROTEIN 55 14 323 - -
Vra5g2249 335 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vra5g2249 335 CDD SANT 81 121 IPR001005 -
Vra5g2249 335 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2249 Vra-Chr5 28649186 28651119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2249 13 335 MYB Transcription Factor Family AT3G12720 49.390 1.61e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g2249 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2249 K09422 - gmx:100791209 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2249 5 28649186 28651119 Vra5g2249 5 28649186 28651119 ECH