Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2243 ATGGGTAACCTCTTTGGCAAAAATAAAAAGGATAGCAGTCATAGTTCAAGCTATGATAAAGGAAGAGGTGGAAGAATCTTCACTAACGTGACCACAAGAGGTTTACCACCCAATTTTCCATCGCAAATATCTTCGTCCTTGCCACCACCAATATTATATCCATCTCTGGAACCACCTTCTTCGACGGCACCACCACCACCGGTGCGATCACGATCCATTTCCAAGAAACCAAGTTTTCTGAGAGTTGACTCTAAGCAGAGCTCTTCAGTCATGGACAAAAAGCAATCTGCAGCCAAAAAGTATGCTCTTATCCGTGACAACTTCTCTACCCTTGAACAGGTGACAACAGCCTTAAGGAAAGAAGGATTAGAATCCTCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAACTACTCCTAATCCTTATGAGAAGGCTATCTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACTACCCATGATCAAGAAGTGTTTAGCTTTCACAGTCATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAGCCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACTAGAAGTGTCAACACTGGAGATGGAGAACTAAGTCCTCAGGAGGAGAAGACAATCAAAGCAATCGTTGATGCAAGCAGTGCATATCCTCTTGCAATAGTTCTAGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTCGATGACAGGATACCTGCACGCGATTATGACAATTTTCAGTTTGTTAATTTCACGGAAATAATGTCGAGAAACATAAGCCCCTCGGAGAAAGAAGCAGCTTTTGCTTTGGCTGCTCTCATGGAGATTCCATTCCAATATAAAGCAACCATGGAATTTGGAATACTAGGACGTGTGACAGGAAGAGCAAAGAGAATAGTTCCAAAAGCTCCTCCTTTACCCTATTCTAGGCCTGCACCATCACTAGCTCGTCTTCCCACCACTGCACCACCTACCTCCAACGATGACAGCAACCAATCGGTTTGTCCTGTTTGTTTGACCAATCCAAGAGACTTGGCCTTCGGGTGTGGTCACATGACATGCAAGGATTGTGGATACAAGTTAACTAATTGTCCGATGTGTCGAGAGAGGATCAGTACTCGTCTGAGGGTGTACAGTGGATGA 1368 0.4349 MGNLFGKNKKDSSHSSSYDKGRGGRIFTNVTTRGLPPNFPSQISSSLPPPILYPSLEPPSSTAPPPPVRSRSISKKPSFLRVDSKQSSSVMDKKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGTTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSHHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASSAYPLAIVLVGVGDGPWEDMRKFDDRIPARDYDNFQFVNFTEIMSRNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPKAPPLPYSRPAPSLARLPTTAPPTSNDDSNQSVCPVCLTNPRDLAFGCGHMTCKDCGYKLTNCPMCRERISTRLRVYSG* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2243 455 MobiDBLite consensus disorder prediction 31 49 - -
Vra5g2243 455 Pfam Zinc finger, C3HC4 type (RING finger) 407 448 - -
Vra5g2243 455 CDD RING-HC_RGLG_plant 409 453 IPR045317 GO:0061630|GO:0070534
Vra5g2243 455 MobiDBLite consensus disorder prediction 394 408 - -
Vra5g2243 455 SUPERFAMILY RING/U-box 405 449 - -
Vra5g2243 455 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 454 - -
Vra5g2243 455 PANTHER COPINE FAMILY PROTEIN 1 1 454 - -
Vra5g2243 455 ProSiteProfiles Zinc finger RING-type profile. 410 443 IPR001841 -
Vra5g2243 455 Pfam Copine 150 363 IPR010734 -
Vra5g2243 455 MobiDBLite consensus disorder prediction 77 93 - -
Vra5g2243 455 SMART VWA_4 125 328 IPR002035 -
Vra5g2243 455 MobiDBLite consensus disorder prediction 51 66 - -
Vra5g2243 455 MobiDBLite consensus disorder prediction 378 408 - -
Vra5g2243 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 454 IPR013083 -
Vra5g2243 455 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2243 Vra-Chr5 28531179 28546400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2243 376 450 Miscellaneous Gene Families AT4G39050 32.468 3.69e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2243 K16280 - gmx:100790153 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2243 5 28531179 28546400 Vra5g2243 5 28531179 28546400 ECH