Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2231 ATGGGAACGCCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCATGGATTGATGGTGAGGTCACAGAAATTAATGGCAAAAATGTTACCATCACTGCCACAAATGGGAAAACTATGGTGGCAGATATTTCAAGCATATACCCCAAAGATACAGAAGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCTTACCTTCATGAGCCAGGAGTCCTGCATAATCTTGCAACTCGTTTTTCTCTCAATGAGATATATACATATACAGGGAATATCTTAATTGCAGTGAATCCTTTTCGAAGATTGCCACATTTGTATGACATCCATATGATGCAGCAGTACAAAGGTGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCTGACACATGTTACAGGGCAATGATAAATGAAAATGGAAGCCAATCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACTGAGACAACAAAAATGCTCATGAGGTACCTAGCATTCATGGGGGGTAGATCTGCTACTGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTCAAAAACAACAATTCAAGTCGATTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCCGGAGCTGCAATCCGAACATATCTGCTTGAAAGGTCACGAGTTTGCCAGGTCTCTGACCCAGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATGCCAAAAAATACAAGTTAGGGGATCCAAGGCAATTCCACTATCTTAATCAATCAAACTGTTATGAAGTGTCAAATGTAGATGATGCAAAAGAATACTTGGAGACCAAAAATGCAATGGATATTGTGGGCATTAACCAAGAAGAGCAGGATGCTATCTTCCGTGTGGTAGCTGCAATCCTCCATCTTGGAAACATTGACTTTGTCAAAGGGAAAGAAGTGGATTCTTCAAAATTGAAAGATGATAAATCACTCTTCCACCTCCAAACAGCTGCGGAGTTATTCATGTGTGATGCAAAAGCACTGGAAGATTCACTTTGCAAGCGTGTCATTGTAACTCCTGATGGTAACATCACCAAACCTCTGGACCCTGATGCTGCTGCTTTGAGTCGAGATGCCTTGTCAAAGACTGTGTACTCCAAATTGTTTGATTGGATTGTGGACAAAATTAACAGTTCAATTGGCCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGACATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACGAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAATTGGAGCTATGTAGAGTTTGTGGATAATCAGGATGTTCTTGATCTTATCGAAAAGAAACCAGGGGGAATAATCGCTCTTCTAGATGAAGCCTGCATGTTCCCAAAATCAACTCATGAAACTTTTGCACAAAAGATGTACCAGACATATAAATCCCACAAGCGCTTCAGCAAGCCAAAACTTGCTCGAACAGATTTCACAATTAACCATTATGCTGGAGATGTCACGTATCAAGCAGATTATTTTCTTGATAAAAACAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGCCCATTTGTTGCTAATCTTTTCCCTCCTTTACCAGAGGAAACTTCAAAGCAATCCAAATTCTCTTCCATTGGTTCACAGTTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAATACAACAGAACCGCATTACATACGATGTGTGAAACCAAATACAGTTTTGCAGCCTGGGATCTTTGAGAACTTCAACGTCTTGAACCAATTAAGATGTGGGGGAGTACTTGAGGCAATAAGGATTAGTTGTGCTGGATATCCAACAAAAAGAACTTTTGAAGAGTTTCTTGATCGTTTTGGAATGCTAGCCCCCGATGTCCTTGATGGTTCTGATGAGAAAAAGGCCGCTATGGCCATCTGTGATAAGATGGGCTTAAAAGGCTATCAAATGGGAAAAACAAAGGTATTTCTCAGAGCAGGTCAGATGGCTGAAATGGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAAACTCATCCAGAGACAAATCCGAACACATTTAACCAGAAAGGAGTTCATCACCCTAAGAAAGGCCACAATATATATCCAGAAGATGTGGAGAGCTAAACTTGCGCGTGAACTCTATGAACATATGAGGAGGGAAGCAGCTTCTATCCGGATACAGAAACATGCGCGTGCACACAGAGCAAGAATGTACTATACATCATTACAAGTATCAGCTATAGTTCTTCAATCAGGCTTGAGAGCATTTGCAGCACGAAATGAATATAGGTACAGAAGAAGAACAAAGGCTTCAACGAAAATTCAGACACAATGGAGAAAAGTTCAAGCTCTTTCTGATTACAAACAACAGAAGAAAGCAACTGTTTCACTTCAATGTCTTTGGAGAGCTAGAATTGCAAGGAAAGAGCTCCGAAAGCTTCGGATGGCTGCAAGAGAAACTGGGGCACTTAAGGAGGCAAAGGACAAGCTGGAGAAGCGTGTTGAGGAGCTTACATGGAGAATAGATATTGAAAAGCACATGAGGATGGATCTTGAAGAAGCTAAAGGGCAAGAGATTGCAAAATTGCAAAATGCATTACAAGAAATGCAAGCTCAGCTAGATGAAGCCCAGGCAGCAATTATACATGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTACCTGTTGTGGACGATACAAAGCTAGAGTTACTGACAAATAAAAATGAGGAGCTGGAGACTGAAGTGGAAGAGCTTAACAAGAAGATTAAAGAGTTTGAAGAGAAGTTCTCAAAAATTGAAAACGAGAATCAATCAAGGGTGAAAGAGGCGGAAGAAGCACAGCTTAAAGCAACACAACTTCAGGAGACCATTGAAAGATTAGAATTGAGTTTGTCAAACCTGGAGTCTGAGAACCAGGTTCTATGCCAGCAGGCTTTGGAAGAATCAAAAAATGAAGAACTCTTTGAAGAGATCAAAATCCTCAAGGGTCAGATAGCAAATCTAGAATCAGAGAATGAATCCCTACGGAGCCAGGCAGCAGCAGCAGCTGCTTTAGAGCAGAAAGTCCATCCAGAGAAAATAGAAACAGACCATTCAGCAGCTGCTTTAGAGCAGAAAGTTCATCCAGAAAAAAATGAACCAGAACCTGAAGTTGCTGTTGTAGAGAAGATCAAAGTGCAACCAAGAGTTATTGCAGATAATGTGACTGCCCAAATCAAGGAACCAAAAGCACCGGTCTTCTTGCTTACTAAACAAAGATCACTCACAGACAGACAGCAGGAAAGTCATGATGCACTGCTCAAGTGTCTCGCTGAAGATAAGCGATTTGAGAAAAACAGACCAGCAGCTGCTTGTATTGTATATAAAGCACTTCTTCATTGGAGATCCCTTGAAGCAGAAAAAACACATATTTTTGATAAAATTACACACACTATCCGATCATCTATAGAGAGTCAAGAAGGAATCCATGATCTAGCCTACTGGCTTTCAACTATTTCAACACTTCTGTTTTATCTACAATGCACAATGAAGGCCAGCAATACAACTAAGGCAGTGTCACGTAATCGAAACTCCCCTGCCACTTTGTTTGGAAAAATGGCACAAGGTTTGCGTTCATCTTCAATGGGCTTGGGGATTTCAAGTGGCTACAGTGGAATGGTGGAGAAGCCAAATGATCAGTCTAAAGTAGAAGCCAAATATCCAGCTATTCTGTTTAAGCAGCATTTAACTGCATATGTGGAAAAGATATATGGAATGATCCGTGATAGTCTAAAGAAAGAGATTAGCCCATTCTTAAATTTGTGTATACAGGCACCAAGATCCATAAGAACTAGATCAATAAGAGGATCATCCAGAAACATCCATTCAAATATTGTTGCAAAACAGCAAGCATTACATATGTACTGGAAGGGAATCGTGGACAAGTTAGATCATGCCTTGCGTATATTGTCCGATAACTATGTCCCTCCCATCATTACAAGAAAGATATTTAGTCAGGTTTTCTCATTCATGAATATCCAGCTATTTAATAGTTTGTTGCTTCGTCGTGAGTGCTGTTCCTTTAGCAATGGAGAATATTTGAAGGCAGGGTTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAGACCAGTTTGCTGGTTCATCTTGGGATGAACTCAAACATATACGCCAAGCTGTGGGATTTCTGGTTTTGCATCAAAAGACTCAAAAATCTTTAGAGGAAATCACGAATGAGCTATGCCCGGGGTTAAGTATTCCACAAATATATCGTATTGGAACTATGTTCTGGGATGACAAGTATGGGGCACAGGGATTATCTGCAGAAGTCATTAGCAGAATGAGAGTGATTATGACAGAAGACTCAATAAGCATACATCATAGCTCATTCCTTCTAGAGGTGGATTCCAGCATACCATTCTTGATGGAGGAGATGTTTCGGTCCATGAGTGACATCCGCCTATCAGACATGGATGTGGATCCACCACCAATACTCAGGCAAAGATCTGACTTCCATTTCTTGTTGCAACAAATGGACAGTGACTCTCAGTGA 4764 0.4072 MGTPVNIIVGSQVWVEDPEDAWIDGEVTEINGKNVTITATNGKTMVADISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLATRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMQQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSATEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDAKKYKLGDPRQFHYLNQSNCYEVSNVDDAKEYLETKNAMDIVGINQEEQDAIFRVVAAILHLGNIDFVKGKEVDSSKLKDDKSLFHLQTAAELFMCDAKALEDSLCKRVIVTPDGNITKPLDPDAAALSRDALSKTVYSKLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKSHKRFSKPKLARTDFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCPFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPDVLDGSDEKKAAMAICDKMGLKGYQMGKTKVFLRAGQMAEMDARRAEVLAKAAKLIQRQIRTHLTRKEFITLRKATIYIQKMWRAKLARELYEHMRREAASIRIQKHARAHRARMYYTSLQVSAIVLQSGLRAFAARNEYRYRRRTKASTKIQTQWRKVQALSDYKQQKKATVSLQCLWRARIARKELRKLRMAARETGALKEAKDKLEKRVEELTWRIDIEKHMRMDLEEAKGQEIAKLQNALQEMQAQLDEAQAAIIHEREAAKIAIEQAPPVIKEVPVVDDTKLELLTNKNEELETEVEELNKKIKEFEEKFSKIENENQSRVKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQQALEESKNEELFEEIKILKGQIANLESENESLRSQAAAAAALEQKVHPEKIETDHSAAALEQKVHPEKNEPEPEVAVVEKIKVQPRVIADNVTAQIKEPKAPVFLLTKQRSLTDRQQESHDALLKCLAEDKRFEKNRPAAACIVYKALLHWRSLEAEKTHIFDKITHTIRSSIESQEGIHDLAYWLSTISTLLFYLQCTMKASNTTKAVSRNRNSPATLFGKMAQGLRSSSMGLGISSGYSGMVEKPNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQALHMYWKGIVDKLDHALRILSDNYVPPIITRKIFSQVFSFMNIQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWDELKHIRQAVGFLVLHQKTQKSLEEITNELCPGLSIPQIYRIGTMFWDDKYGAQGLSAEVISRMRVIMTEDSISIHHSSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRQRSDFHFLLQQMDSDSQ* 1588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2231 1587 Coils Coil 876 949 - -
Vra5g2231 1587 Gene3D - 732 784 - -
Vra5g2231 1587 Gene3D - 785 831 - -
Vra5g2231 1587 Gene3D - 832 881 - -
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Vra5g2231 1587 Gene3D - 252 310 - -
Vra5g2231 1587 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 PANTHER MYOSIN-12 19 1049 - -
Vra5g2231 1587 PANTHER MYOSIN-12 1051 1577 - -
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Vra5g2231 1587 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 Gene3D - 667 729 - -
Vra5g2231 1587 Coils Coil 1055 1092 - -
Vra5g2231 1587 Coils Coil 972 1048 - -
Vra5g2231 1587 CDD MyosinXI_CBD 1161 1547 IPR037975 GO:0007015
Vra5g2231 1587 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Vra5g2231 1587 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Vra5g2231 1587 Pfam IQ calmodulin-binding motif 808 826 IPR000048 GO:0005515
Vra5g2231 1587 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Vra5g2231 1587 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Vra5g2231 1587 CDD MYSc_Myo11 76 719 IPR036018 -
Vra5g2231 1587 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 781 803 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 733 755 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 852 874 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 829 851 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 756 778 IPR000048 GO:0005515
Vra5g2231 1587 SMART iq_5 804 826 IPR000048 GO:0005515
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Vra5g2231 1587 Pfam DIL domain 1400 1503 IPR002710 -
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Vra5g2231 1587 ProSiteProfiles Dilute domain profile. 1210 1524 IPR002710 -
Vra5g2231 1587 ProSiteProfiles IQ motif profile. 830 859 IPR000048 GO:0005515
Vra5g2231 1587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Vra5g2231 1587 SMART DIL_2 1399 1506 IPR002710 -
Vra5g2231 1587 Pfam Myosin N-terminal SH3-like domain 10 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vra5g2231 1587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Vra5g2231 1587 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g2231 1587 Gene3D - 439 623 - -
Vra5g2231 1587 PANTHER MYOSIN 19 1049 - -
Vra5g2231 1587 PANTHER MYOSIN 1051 1577 - -
Vra5g2231 1587 Gene3D Kinesin motor domain 65 662 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2231 Vra-Chr5 28291978 28304962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2231 116 1582 Myosins gene family AT2G31900 72.771 0.0 2218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2231 K10357 - gmx:100817933 2862.79