Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2229 ATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACCGATGAAGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGACAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACTACAGCAGGATTTTGGAAAGCAACTGGAAGAGACAAGGCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAGGAAGATGGGTGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGAACTTAACCCACATGAGAACAAGTGGTCCTTGCCATGTTCTGGAGCCAAAACATCATATGCAAGGAGGATTATATGACTACAACTTTGATGGCACAATGCAGCTTCCGCAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAAACAATAGTTGCTTGGCCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACCACTAATGGCTGTGGACTGAATCTTATGCAACAACAGGGAGAGAGGTTCAGTGGTGATTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGCCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTTCTGTTGCCACTTCAGCTCAGAAATTCCCATTCCATTACCTTGGCTGTGACACCCATGATATCATGAAATTTTCCAAGTAG 975 0.4451 MMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLTHMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPNNSCLATSMNAMDILECSQNLLRLTTNGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAATSVATSAQKFPFHYLGCDTHDIMKFSK* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2229 324 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Vra5g2229 324 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Vra5g2229 324 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vra5g2229 324 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Vra5g2229 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 305 - -
Vra5g2229 324 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2229 Vra-Chr5 28264284 28267549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2229 6 324 NAC Transcription Factor Family AT1G79580 53.989 9.26e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2229 NAM 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2229 - - gmx:100815632 588.186