Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2221 ATGCCTGATTTACCACCTGAGATGAGACACAATGTGTCAGAAGAGGCACACCATAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAAGAACTCACCAACTCATCCCAATAATGTGAACCAAGCAGAAAAAGAGACCTTCAGAGCAGCAAATGTCCACAATTCAGGAAGAGAAACTGGACAATTGGACCATGTTTCAAAATCTGATAATGCAAAGTTGGAAGGTAAATCAAGACCCCAGAGGGTAATTCCACCAAACAGGAATATCTCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAACGAAAAAGCCTGTTCAAAACCCTGATCACCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGAATCATGGGAGTACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACACATTAGGCCGCATACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGGTTTCAAAGTGTGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTCCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTGGTTATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCTCTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAGGGCCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTAGTCAAATCTTCATCTGCCCATGCAACCAACAATAGTGGTGGCAACAGTGACTCCAGTGGCGTACTAAGTGATGACCAAGCAAGCACTACTCAAGCGTCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGCACGCCTTCCTGAACTGATGGCAGAACCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGAATCTTCTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAGGTCAGTGCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACGGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCTCACATACCAGATGCTATAGACTTCACCAAGTATGCCAGCAAAGACACACCACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCCATAATGCTAGTGATTCTTACGTAGATTTTGAGTATTTTTAG 1698 0.4494 MPDLPPEMRHNVSEEAHHSVHSSCAKSGKNSPTHPNNVNQAEKETFRAANVHNSGRETGQLDHVSKSDNAKLEGKSRPQRVIPPNRNISDFNPQQHQSPSTTKKPVQNPDHHHSKTVSVSTPHGKTSNHGSTGSRSNSLESTSAHIRPHTGGDVRWEAINMVSKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHATNNSGGNSDSSGVLSDDQASTTQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDAIDFTKYASKDTPPPVDKKMADIANDKHSHNASDSYVDFEYF* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2221 565 Gene3D Phosphorylase Kinase; domain 1 166 258 - -
Vra5g2221 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vra5g2221 565 MobiDBLite consensus disorder prediction 1 150 - -
Vra5g2221 565 MobiDBLite consensus disorder prediction 59 75 - -
Vra5g2221 565 Pfam Protein kinase domain 396 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2221 565 Pfam Protein kinase domain 174 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2221 565 MobiDBLite consensus disorder prediction 82 105 - -
Vra5g2221 565 ProSiteProfiles Protein kinase domain profile. 173 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2221 565 SMART serkin_6 173 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2221 565 MobiDBLite consensus disorder prediction 112 145 - -
Vra5g2221 565 PANTHER FLIPPASE KINASE 1-RELATED 21 565 - -
Vra5g2221 565 MobiDBLite consensus disorder prediction 23 58 - -
Vra5g2221 565 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 21 565 - -
Vra5g2221 565 SUPERFAMILY Protein kinase-like (PK-like) 162 538 IPR011009 -
Vra5g2221 565 Gene3D Transferase(Phosphotransferase) domain 1 259 522 - -
Vra5g2221 565 MobiDBLite consensus disorder prediction 8 22 - -
Vra5g2221 565 MobiDBLite consensus disorder prediction 333 354 - -
Vra5g2221 565 CDD STKc_phototropin_like 171 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2221 Vra-Chr5 28150797 28154949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2221 139 565 AGC Kinase Gene Family AT1G79250 71.018 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra5g2221 Pkinase 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2221 - - gmx:100784301 942.569