Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2217 ATGGCCGCTGCCGACTCCTCCACCGCCGCTCCTTTACGCCAGCTCTCGCAGAAGGAGACGGACATCCAGATGATGCTCGCCGCGGATGTGCATCTCGGCACGAAAAACTGCGACTTCCAAATGGAACGCTACGTCTTCAAGCGCCGCACTGACGGTATATACATAATTAACCTTGGCAAAACATGGGAGAAGCTCCTTCTTGCTGCTAGGATAATTGTTGCCATTGAGAACCCACAAGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTGCTTAAATTTGCTCAGTACACCGGGGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTCTAATTCTCACTGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGTGCTCTTGGCAACATTCCCACTATTGCCTTTTGTGACACTGACTCTCCAATGCGGTATGTTGACGTTGGGATTCCGGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTGTTTTGGCTTTTAGCTCGTATGGTGCTGCAGATGCGGGGTACTATTCGTCTGGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCTAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTGATTTCAATGATACTGGCATTAGCAGCTTCCCTGCCGATAGACAATGGCCTACTGCACTCGATCAACCCTGGACAGATGACGCTCCACAACCAATTCCGGTAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCTGCACCGGTTCCCGCCGCCGTACCGCCTCCACAAGTTGGTGTGCCTCCAGCTCAAACTTTTCCTGCTACTGGCTGGGAATAG 942 0.5032 MAAADSSTAAPLRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLLLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRLGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDFNDTGISSFPADRQWPTALDQPWTDDAPQPIPVVPTNWTPETAAAGDWGEAVPAPVPAAVPPPQVGVPPAQTFPATGWE* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2217 313 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 Gene3D - 21 226 - -
Vra5g2217 313 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 Hamap 40S ribosomal protein SA [rps-0]. 9 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vra5g2217 313 MobiDBLite consensus disorder prediction 286 313 - -
Vra5g2217 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 293 - -
Vra5g2217 313 MobiDBLite consensus disorder prediction 289 303 - -
Vra5g2217 313 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g2217 313 TIGRFAM uS2_euk_arch: ribosomal protein uS2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vra5g2217 313 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Vra5g2217 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2217 Vra-Chr5 28123261 28125897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2217 1 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.414 7.54e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2217 K02998 - gmx:100786575 539.265