Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2212 ATGGCAATGGAATCATCAAAAGGATACTCACACTATACAAAGGAGGATCTACACATCATGAAAAGCAAAAGCAAGAAGAATAACACACCAAGAGAAATTGAAATGGAAGGCAAAGCTTTAGGAGAAGTGAGAAGGCTTCACATCATTTACTTCCTCAGTCAGATTGGTGGTCGTGCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTACTCGTAATGGAGTTTATCTGAGAGATGTCAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTGCCTGAGGCATTTTCTTGGTCCTACAAGAGAAGGTACAAGAGTGGATATGTGTGGCAAGACTTGCTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTACCCCATTTGCAACAACTCCTTCACTAGAAGAAAAGAAACCTGTAGTTTGTGATATCCATGCTGAAAAGATGTGCCCTCAATTACAAGTTGTAGAGGACAAAGAACACCACCAGCAGCAACACCAGCAGCCGCCACTGTCTCTAGCAGAAGAAGAATCTCAGATTCAACCAGACCAGAATTCGAAAACAAATTCTCCAACAAAAGGGTCATCAGAAATCAGTCAGGACTCGTTGGTCTTCAGCTCAGACAGGTCTTCTGTGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCACTTAGAGATCACAACAGGCAGTGAAATGCACCAGGAGAAATTAGAGACTTGCTCATTGCCTTCCTTGTATCACAATCTGTTGAGTAAGAAGGGCACTCACAAAGATGACCAAAATAAGACTCACTCACCTGATTCATCCCTGTCCACCATATCCACATCATCATCTCAATCATCCTTCACTAAGATCAGAAGCAATTCTACCAAAGTTTCTAATATTTTTCGAAATTGGATCACTTGTGGCACTGTGGAAACAAACGATGCAGCACTCGTCATCATGAACCCGGCTCAAACAAAAATTTCGAAGGAACCCAGCAACATACCTGAATCAAAAGCTGAGATTTGTAAGGGAGACCGATTGGGAGGATCAGAGAGGTGCTTTAGGACTTCTTGGGGTCATCAAGACCAGAAACAGCAATATGGCGCAAGAAAAAGCTTTGATGGTGAGGAAACAAACAGGAGCAGGAAAAAGTTAGGCGACTTGCTAAATCAAAGTTCTTCCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATGAAAGCCTTGGGAAAGTCAGCTCCAATTGTTGAGGAGGCACAGCTTCCGAGATCATCAACTTCATCCCATACACATTACTTTTGA 1380 0.4246 MAMESSKGYSHYTKEDLHIMKSKSKKNNTPREIEMEGKALGEVRRLHIIYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKDLPEAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTTPFATTPSLEEKKPVVCDIHAEKMCPQLQVVEDKEHHQQQHQQPPLSLAEEESQIQPDQNSKTNSPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLEITTGSEMHQEKLETCSLPSLYHNLLSKKGTHKDDQNKTHSPDSSLSTISTSSSQSSFTKIRSNSTKVSNIFRNWITCGTVETNDAALVIMNPAQTKISKEPSNIPESKAEICKGDRLGGSERCFRTSWGHQDQKQQYGARKSFDGEETNRSRKKLGDLLNQSSSKPFGGPICSQCGKSFKPEKMYKHMKSCKGMKALGKSAPIVEEAQLPRSSTSSHTHYF* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2212 459 MobiDBLite consensus disorder prediction 278 297 - -
Vra5g2212 459 MobiDBLite consensus disorder prediction 168 249 - -
Vra5g2212 459 MobiDBLite consensus disorder prediction 223 245 - -
Vra5g2212 459 MobiDBLite consensus disorder prediction 366 388 - -
Vra5g2212 459 MobiDBLite consensus disorder prediction 177 222 - -
Vra5g2212 459 PANTHER F3F20.2 PROTEIN 37 444 - -
Vra5g2212 459 MobiDBLite consensus disorder prediction 266 297 - -
Vra5g2212 459 Pfam Protein SOSEKI, plant 47 340 IPR010369 -
Vra5g2212 459 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 37 444 IPR010369 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2212 Vra-Chr5 28072425 28077709 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g2212 DUF966 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2212 - - vun:114179809 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2212 5 28072425 28077709 Vra5g2212 5 28072425 28077709 ECH