Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2202 ATGGAGATATTATCACAAATGTGGTCTCTGTTAGGGTTACTCACCGTGCTCCAAAACGTTCTCCCATCCCAGCTTCTCTCATTGCTCCATTCCTTATACGAATCTCTGCAAGATCTGCTTTCTCCATATTCCTATTTCGAGATTCCAGAGTTCAACGGCTACTGTGGCGTCGACCTCAACGACCTCTACCGCCACGTGCACCTCTACCTCAATGCAGCGAACCACGCCCCCGGCGCCGCGTGCCGTCGACTAACACTCTCCCGCTCGCCTTCCTCGAACCGCATCTCCTTCGCCGTCGCCCCGAACCACACCGTCCACGATGCCTTCCGCGGCCAACGCGTCACATGGACGCACCACGTTGAGACCGCGCAGGACTCACTCGAGGAGAAGCGCAGCTTTACACTCCGCCTCCCGAAGCGCCACCGCCACTCACTCCTCTCTCCCTACCTATCCCACGTCACCGCACGCGCCGAGGAGTTCGAGCGCGTCTCGCGAGAGCGTAGACTCTTCACCAACAATACCACCGGGTCGGGCTCCTTCGAATCGGGTTGGGTTTCCGTCCCATTCCGTCACCCGTCCACCTTCGAGACCCTCGCCCTCGAGCCCGAACTGAAAAGACAAATAAAAAACGACTTAACGGCTTTCGCTGACGGCAAAGAGTTTTACAATCGAGTGGGCCGGGCCTGGAAACGTGGGTATTTACTCCACGGCCCACCCGGGTCGGGTAAATCGAGTTTAATAGCCGCTATGGCAAATTTTCTCTGTTACGACGTTTACGACTTGGAACTAACCAAAGTCTCTGATAACTCCGAGTTACGGTCGTTACTAATCCAAACTACGAACCGTTCTATTATCGTTATCGAAGATATTGACTGTTCCGTTGACTTAACGGCAGACAGAACAACGAAGAAAACACAGGCAGCGAAATTATCGAAGAGAAAGAAGTCTCAAACGGCGTCGTTCACGCGCTGTGAGGAGAGTGGGCGTGTGACGCTTTCGGGGCTTTTGAATTTCACCGACGGGTTATGGTCTTGCTGCGGTGACGAGAGGATTGTGGTGTTCACAACCAACCATAGGGATAGTGTGGACCCCGCGCTCGTGCGGTGTGGCCGAATGGACGTCCACGTCAGCCTCAACACGTGTGGGGTTCACGCGTTCCGCGAGCTCGCGCGAAACTACCTCGGCGTAGACTCGCACGTGCTGTTCGAGGCAGTTGAGGGTTGCATTCGCTCGGGTGGGTCTCTCACGCCCGCACACGTGGGAGAGATTTTGCTGCGGAATAGAGGAGATGCTGACGTGGCGATGAGGGAAGTGCTGGCAGCCATGCAGGGACGGATGCTGGCCGCTGCCGCCGTAGCTGACCAGGCGGAGAACGAGGACACGACAGTTGGAGTGAGGTCGCCGGAGAGCGTGCTGCTGATGGGTTCGCCGGAGAATTGGGATGCTTTGAGCGGAAAGAAGAGGAAGGAACAAAATGGGGGTAATAACAATTGGGATAAAAAGGTCAAGTTTTTCGTTAGGTTAAGGTCGTTGACCAGATCTGACCCTGGAAGATAA 1557 0.553 MEILSQMWSLLGLLTVLQNVLPSQLLSLLHSLYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHVHLYLNAANHAPGAACRRLTLSRSPSSNRISFAVAPNHTVHDAFRGQRVTWTHHVETAQDSLEEKRSFTLRLPKRHRHSLLSPYLSHVTARAEEFERVSRERRLFTNNTTGSGSFESGWVSVPFRHPSTFETLALEPELKRQIKNDLTAFADGKEFYNRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRTTKKTQAAKLSKRKKSQTASFTRCEESGRVTLSGLLNFTDGLWSCCGDERIVVFTTNHRDSVDPALVRCGRMDVHVSLNTCGVHAFRELARNYLGVDSHVLFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLAAMQGRMLAAAAVADQAENEDTTVGVRSPESVLLMGSPENWDALSGKKRKEQNGGNNNWDKKVKFFVRLRSLTRSDPGR* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2202 518 PANTHER OS09G0445700 PROTEIN 2 515 - -
Vra5g2202 518 MobiDBLite consensus disorder prediction 476 498 - -
Vra5g2202 518 CDD AAA 219 379 - -
Vra5g2202 518 Pfam ATPase family associated with various cellular activities (AAA) 234 377 IPR003959 GO:0005524|GO:0016887
Vra5g2202 518 Gene3D - 377 450 - -
Vra5g2202 518 SMART AAA_5 229 380 IPR003593 -
Vra5g2202 518 MobiDBLite consensus disorder prediction 482 498 - -
Vra5g2202 518 PANTHER BCS1 AAA-TYPE ATPASE 2 515 - -
Vra5g2202 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 405 IPR027417 -
Vra5g2202 518 Gene3D - 185 376 IPR027417 -
Vra5g2202 518 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524|GO:0016887
Vra5g2202 518 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2202 Vra-Chr5 27949965 27951896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2202 231 378 Calmodulin-binding Proteins AT3G56690 26.797 5.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2202 K08900 - gmx:100820437 912.524