Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2201 ATGGCGACGGCGGCGGAGCCAGAAGCGAAGACCTACTGGTGCCACGAATGCGATATGAGCGTGTCCCTCACGCTCCTTCCCTCGCCTCTCCTCTGTCCCCACTGCCACACCTCCTTCCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCGCCCCTCTTCGACGTCGTTTTCCAGGACGCGCTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCCGCCCTCTCCCCTCCGTCAACGTCACACCCTCGCTCCTTTCCGCTCTCGACCCCAACGGCGTCGTTTTCTGCGCCGTGTGCAAAGACCAAATTGTCGTCGACGCCGAGGCCAAACAGTTGCCCTGCAAACACCTCTACCACGCCGATTGCATCACGCCGTGGCTCGAGCTCCACGCGTCGTGCCCGTTGTGCAGGCTCCGCCTTGAGGAAGAGGCGGCACAGGAGGAGGAAGACGAAGGTGACGGCGTGGTGACGGAGATCCGAAGGGAGCTGATCGCGAGGCTCACGGAGTTTACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCTCCTGCAAATTGGCGAACCTCGAGGTGCCCAAGCGCCTTTGCTATAA 654 0.6177 MATAAEPEAKTYWCHECDMSVSLTLLPSPLLCPHCHTSFLELMDSPFSQNDAESPLFDVVFQDALLLLSPKPLPAKPRPLPSVNVTPSLLSALDPNGVVFCAVCKDQIVVDAEAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEEAAQEEEDEGDGVVTEIRRELIARLTEFTEEDFYGLRTTLSHIASRHALIEENENLLQIGEPRGAQAPLL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2201 217 Pfam Ring finger domain 101 142 IPR001841 -
Vra5g2201 217 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vra5g2201 217 SMART ring_2 101 141 IPR001841 -
Vra5g2201 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 160 IPR013083 -
Vra5g2201 217 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
Vra5g2201 217 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 47 - -
Vra5g2201 217 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 69 170 - -
Vra5g2201 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 47 - -
Vra5g2201 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 170 - -
Vra5g2201 217 SUPERFAMILY RING/U-box 100 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2201 Vra-Chr5 27928306 27931081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2201 2 157 C3H Transcription Factor Family AT2G44330 33.333 3.82e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2201 K11982 - gmx:100775530 300.441