Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2184 ATGGAGGTTGATCTGAATGAAGATTTGGATGGAATAAAAGAGCGACTGAGAAGGCTAGAAGGTGCAGCTTTTAGGGCAAGGCAACGTGAGAGGCGACGAGTGAGTCATGCTCCGATTCAGATAGTTAACCAGGATGGAGAAGTGGTGACAGTTGCTCATCTTGAAGATGGTGATTTTGAAGGAGAAATTATAGAAGAGAGAGAGGGTAAAAGAAAGGGTAGTTATTTGGTTGCTGATGCACTGGGATTGAGAAACAATGATGGTGAGGGTTTTCCTGCAAAGTTGTTTCACTGTAATGTGTGTCTGGAGAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGCCTTGCTTTCACAAGTTGCCATTGACATCTACTTATCCAAAGGCAAAGGAATGTCCAGTTTGTGAAGGAGAGGTCACAAATGAAACTCTTACAACAATATATGGCAATTCAGATGTCCATGACAGTGGCAACTTTAAACTTGATCATGAAATTCCTCCCAGACCCTGTTCAAGGAGAGTTGAGAGCATTTGGCAGCAACTCAGAAATTATTAG 570 0.4246 MEVDLNEDLDGIKERLRRLEGAAFRARQRERRRVSHAPIQIVNQDGEVVTVAHLEDGDFEGEIIEEREGKRKGSYLVADALGLRNNDGEGFPAKLFHCNVCLERAKDPVLTCCGHLFCWPCFHKLPLTSTYPKAKECPVCEGEVTNETLTTIYGNSDVHDSGNFKLDHEIPPRPCSRRVESIWQQLRNY* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2184 189 Coils Coil 2 29 - -
Vra5g2184 189 SUPERFAMILY RING/U-box 97 146 - -
Vra5g2184 189 Pfam zinc-RING finger domain 97 141 IPR001841 -
Vra5g2184 189 SMART ring_2 98 140 IPR001841 -
Vra5g2184 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 186 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra5g2184 189 ProSiteProfiles Zinc finger RING-type profile. 98 141 IPR001841 -
Vra5g2184 189 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 10 186 - -
Vra5g2184 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2184 Vra-Chr5 27736692 27737859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2184 88 187 C3H Transcription Factor Family AT3G58030 46.000 1.54e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2184 K10666 - gmx:100780540 187.578