Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2183 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTAGTTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCACGTTATCAATTGGGCCAGTCATCACTACACGAAAGGATCAGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAAAGCCAAAGAGCAACAACAACATCAACACTCGCACAACAGAAGATCCTTCCGAACCCAACAACAACAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCGCAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGTAGCGGTGGCAACGGCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCTTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAAGCAGTGCCACCAACAATGACTCACCCTCCAAACCCATTGGATTCCCATTTGGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCATCAACACCAATCTCCATCATCTTGA 1149 0.4691 MELGLSLGDSSRPLLSFMEKPREASNQLGLGFSTTLSIGPVITTRKDQQDEQEEFEEEEEEEEEETKPKSNNNINTRTTEDPSEPNNNNNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNGRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSSSQSAPNATINANSGAMTIVKSSATNNDSPSKPIGFPFGKPRFHPFVHTTHQHQSPSS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2183 382 Coils Coil 41 66 - -
Vra5g2183 382 MobiDBLite consensus disorder prediction 27 45 - -
Vra5g2183 382 MobiDBLite consensus disorder prediction 346 382 - -
Vra5g2183 382 MobiDBLite consensus disorder prediction 181 207 - -
Vra5g2183 382 CDD bZIP 252 291 - -
Vra5g2183 382 SUPERFAMILY Homeodomain-like 189 260 IPR009057 -
Vra5g2183 382 Gene3D - 207 257 - -
Vra5g2183 382 MobiDBLite consensus disorder prediction 24 153 - -
Vra5g2183 382 Coils Coil 272 295 - -
Vra5g2183 382 SMART halz 259 302 IPR003106 GO:0006355|GO:0043565
Vra5g2183 382 MobiDBLite consensus disorder prediction 112 131 - -
Vra5g2183 382 MobiDBLite consensus disorder prediction 71 97 - -
Vra5g2183 382 Pfam Homeobox associated leucine zipper 259 293 IPR003106 GO:0006355|GO:0043565
Vra5g2183 382 MobiDBLite consensus disorder prediction 51 65 - -
Vra5g2183 382 Pfam Homeodomain 203 257 IPR001356 GO:0003677
Vra5g2183 382 ProSitePatterns 'Homeobox' domain signature. 234 257 IPR017970 GO:0000981|GO:0006355
Vra5g2183 382 ProSiteProfiles 'Homeobox' domain profile. 199 259 IPR001356 GO:0003677
Vra5g2183 382 CDD homeodomain 203 260 IPR001356 GO:0003677
Vra5g2183 382 PANTHER - 1 377 - -
Vra5g2183 382 PANTHER PROTEIN, PUTATIVE-RELATED 1 377 - -
Vra5g2183 382 SMART HOX_1 201 263 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2183 Vra-Chr5 27703568 27705788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2183 86 318 Homeobox Transcription Factor Family AT2G44910 55.328 1.47e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g2183 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2183 K09338 - gmx:100778742 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2183 5 27703568 27705788 Vra5g2183 5 27703568 27705788 ECH