Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2176 ATGGAAAACCACCAAAACCACAAGGGAGAGGCAGAACCTGACAGAGAAAACAACCAAAACCAAAACAATAACCAGGTGTGGGGCACGTGGGAGGAGTTGTTGCTAGCCTTCGCTGTCAACCGCCATGGATTCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGGGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGGTCTTACGCCGCCGCAACAGGACGCCGAAGCCGCCGGGGACAACTCCGATCACGTCCCGTGGCTGGACGAATTGCGTAAACTCCGTGTCGCCGAGCTCCGCCGCGAGGTCCAGCGGCGCGACGATTCCATTCTGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAGCGAAAGAGAATGACGGTAAAGACGTCCAGAAACCAGATCTGGCGGTTCCCGGCGAAGTGCGGCCGGAAAACGACAAAACCGGCGGAGAAGTCGAAGAGGTTGGACCGGCTAATTCCGGACCGGAGAGAACCGCAAACGCTGACAAGCTGTTGCCAACAGCGGGCGACGAATCGGACCGGGAGAATCAATCAGTTAACGAGTCTAACTCGACCGGTTCGAGGTTTGATAAAACCGGAGAAGGTGATGCAAAGTTAAGAGTCGAACCGGATCCGGTTCAGACCGGTTCAAAAGAAGTGGACCCGGTTGCAAGGAAGGGAAAACCGGTTGGGGAGGAATCGAATAATGGTAGCTACGATGCCTTGGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCTAGTGACGAGAGAAAGGTGGAGCAGGATGATGACTCGTCTGAGTTGCACGACTCAGTGGCTCACTCCGGGGAGGGAGGGACGAGAGAGAGCAGCGAAGTGCAGAGCTCAGCTAGCTTGACGAGGAAGAGGAAGACGCGTCGTAGAAAAGATGTTTCCGGTGGCGACGGTCGCGGAGGTGACACTTCTACACTGCCGGAGAATGAAGAGGTAACGATGCTTAAATCAGAACCGTTGGTTGGTATTTTGGAGTTAATCAAGGGACATGAACACAGTTCATTAATCGAGAGTCGTCTTGAGAGCCAGCTGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCAATGGACATGGAAACCATACAATTAAGAATCCAGAAAGGTCAGTATTTCTCATGCACTAGTGCATTCTTCCGCGACCTCCTCCTCCTGTTCACCAACGCCACCGTCATCTTCCCCCATGACTCTCCGGAGTCACAGGCGGCGCGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACCACACCCAAGCACAATCCGACCCTATCCCCCGGAAGAGCGATTCACTCCCTCCAAACATACCACTAGCCAAACCTGATTCTCTCTTGTCCAAGAACAAAGCCTCTGGTCCCATATTGGTTTGCCGCAAACGCAGTTCAATGTCAGCGAAACCTTCCTCGACCAGTTTTGGCCAAAAGAATGAGCAACCTATCTTCAACGACAAGAAAGAAAGGGCACCTTCTGATTCAAAACCTCCTACGAAACCTTGTTCTGATACAGACGAAGAAGAGCCCCCCAAGGCCAAGGAGAAGCCTGTGACTGGAGTGAGAAGCCTGAGAAGGAGCAACAAGAACCTCAACAATAAGAAACTTTCCTCTAACTCCACTCCTAAAGCGGGGTCCTCGGGTAACAAGCCATCGGAGAGTCTTAAACCAGAGAAGAGTAAAGCAGAGGGAGGGGCAGACAAGAAGAGGAGTGCTGCTGCAGATTTCTTGAAACGGATAAAGCGAAATACTTCAGTGGACGCAGTGAAAGGTGGTGGTGGAGGTGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGAGGTGGTGGTGTTGGTGCCAAAGAGCAGAAGAAAATGGCGAATAATGTAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAGCGTTGGAGGGTCTGCGGATAAAAGGAATAATAAGAACATTGAGAACAGCTCTCAGTCGAAGAGGAGTGTTGGTAGACCTCCAAAGAAAGCAGCAGAGACAAATGCAGGAAATTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAAGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2181 0.5277 MENHQNHKGEAEPDRENNQNQNNNQVWGTWEELLLAFAVNRHGFKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGLTPPQQDAEAAGDNSDHVPWLDELRKLRVAELRREVQRRDDSILSLQLEVKRLEEEKAKENDGKDVQKPDLAVPGEVRPENDKTGGEVEEVGPANSGPERTANADKLLPTAGDESDRENQSVNESNSTGSRFDKTGEGDAKLRVEPDPVQTGSKEVDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKDVSGGDGRGGDTSTLPENEEVTMLKSEPLVGILELIKGHEHSSLIESRLESQLESDRYKDIVKQPMDMETIQLRIQKGQYFSCTSAFFRDLLLLFTNATVIFPHDSPESQAARQLHRLVTTEMKNHTQAQSDPIPRKSDSLPPNIPLAKPDSLLSKNKASGPILVCRKRSSMSAKPSSTSFGQKNEQPIFNDKKERAPSDSKPPTKPCSDTDEEEPPKAKEKPVTGVRSLRRSNKNLNNKKLSSNSTPKAGSSGNKPSESLKPEKSKAEGGADKKRSAAADFLKRIKRNTSVDAVKGGGGGGGGSSSSSKGGGGGGVGAKEQKKMANNVKGDKGKERASRHSVGGSADKRNNKNIENSSQSKRSVGRPPKKAAETNAGNSKRGRENSASAGKDKRPKKRSKK* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2176 726 MobiDBLite consensus disorder prediction 142 346 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 448 726 - -
Vra5g2176 726 Gene3D - 337 459 IPR036427 GO:0005515
Vra5g2176 726 MobiDBLite consensus disorder prediction 584 615 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 273 298 - -
Vra5g2176 726 PANTHER BNAC04G22430D PROTEIN 12 726 - -
Vra5g2176 726 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 12 726 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 142 173 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 220 236 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g2176 726 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Vra5g2176 726 MobiDBLite consensus disorder prediction 495 511 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 649 671 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 1 15 - -
Vra5g2176 726 MobiDBLite consensus disorder prediction 299 313 - -
Vra5g2176 726 Coils Coil 122 149 - -
Vra5g2176 726 CDD Bromodomain 382 447 - -
Vra5g2176 726 SUPERFAMILY Bromodomain 353 458 IPR036427 GO:0005515
Vra5g2176 726 MobiDBLite consensus disorder prediction 512 552 - -
Vra5g2176 726 CDD SANT 27 75 IPR001005 -
Vra5g2176 726 MobiDBLite consensus disorder prediction 83 102 - -
Vra5g2176 726 SMART bromo_6 125 452 IPR001487 GO:0005515
Vra5g2176 726 Pfam Bromodomain 378 437 IPR001487 GO:0005515
Vra5g2176 726 MobiDBLite consensus disorder prediction 672 689 - -
Vra5g2176 726 ProSiteProfiles Bromodomain profile. 361 433 IPR001487 GO:0005515
Vra5g2176 726 MobiDBLite consensus disorder prediction 553 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2176 Vra-Chr5 27611975 27617273 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g2176 Bromodomain 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2176 - - gmx:100811021 1019.22