Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2172 ATGTGGAGATTTAAGCCATTCGGCCACAAAGAGCAGACTGGCCTTGAAGGCCGCACTGTAGATGTTGGCAATCTTAAAATAAACATTGTTAAGGCCATTGCGGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCCTTGAAGCACATAATATGCAATGATGAGGAATCACTAGGATTGGTAAAGAAGGAGATATCTGTGCTTAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATTCCATCTTTGATATGGGTAGGACAAAGGAGGCATTCCTTGTGATGGAATTTTGTGAAAGGTCTCTGGTCAATGTGCTGGAGAGCCGCGGAGCTGGTTATTTTGATGAGACACAGGTTCTTTTGATCTTCAGGGATATCTGTAATGCAGTTTTTGCTATGCATTGCCTGTCCCCACCTATTGCACACCGAGACTTGAAAGCGGAGAATCTTTTATTAAGTTCAGATGGCATATGGAAGTTATGTGATTTTGGAAGCACTTCCACTAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCCGGAAGTATACAACTCCAGCCTACAGAGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAGGTCATTAATGAGAAGGTAGACATATGGGCTCTTGGATGTCTTCTTTTTCGAATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTTCAAGTCTTAAATGGAAACTACCGTATTCCTGATTTACCGAAATACAATTCATCTATCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAACGAGCAACTGCCCATTAATCTACAGAAGTCATTACCTGACAGGCCACCTGAATCACCCTCACCCAACAATCATGAAGGTATCTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCGCCTTTATCCGGAGAACCGAAGACTACACCACAGCCATCCCTTGCTTCTAGGGGAGGGAGCAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCAGTCAGCACGCAAAGGATCCACTTGTCACTGAGGACAAGAGCAAGCCAATTTTTGATGAAGAACCATCCAGTCACCATATGCCACTGAAACATGATAGACTTCGTCCTGAAAATGAACAATTAGCAAAAAATGTTAGTACTAGCAAAGTGGTTAATGCACAAACTCATACTGTGAAAAGCAGTACACATGGAAAATTAAACAAGCCTGATACCAAACCCTCGAAGGATTTTGAAATAAACTTATTCCAAGATAAAGATCGAATGGAGAATACGGCTAACTTTCAGAACCAGGCTTTTAACTCGTTTGTTGCTGAGTTCGATACCACTAAGCTCAACACTGGACTTAATAACAAATCCGAAAGGGAACAAACATTGGAGGCTGAAGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACGTGGAAAAAGCTGAAATAACCTCAAAGTTTGAAAAGCTTTCTGCTATCTGCCGATCCCAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTGGCAGGTCGGACTCCTTCACCAAGCAGAGAGGGTTTGAAAACCTCTACTGCAATTACATCATCTGCACCTATGGATAGAACTGAATGGAAAACTCCCAGTTCAGAACCTAAGTCATGGCAAGCGTTTCCTGAGGAACCCCAACAACAAAAGTCCCTTTCAGCAGGAAATACTACCAAATCAGTCAGGTCAAATAATGGCAGGCAGAACAAGCAACCTGTTCAACTGGCTACTAATTTTGATTCATGGGGTTTTGGAACTGATAGCTTCAGTGCTGTACCTACTGGCAGCTCACAGATGCAAAGATCTAGCAGTGCCGGAGGTAAGTCTCAGGGCTTTGATGAGGCAAAGACCTTTGAGAGCAAACCAACTTCTCAACCAGCTGGCTGGGCTGGTTTTTAA 2019 0.4403 MWRFKPFGHKEQTGLEGRTVDVGNLKINIVKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVLKMLVGHPNVVTLHAHSIFDMGRTKEAFLVMEFCERSLVNVLESRGAGYFDETQVLLIFRDICNAVFAMHCLSPPIAHRDLKAENLLLSSDGIWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYNSSITDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSPNNHEGISMPSNRSPPMPRRNPPPPPLSGEPKTTPQPSLASRGGSSGGQLGAFWSSQHAKDPLVTEDKSKPIFDEEPSSHHMPLKHDRLRPENEQLAKNVSTSKVVNAQTHTVKSSTHGKLNKPDTKPSKDFEINLFQDKDRMENTANFQNQAFNSFVAEFDTTKLNTGLNNKSEREQTLEAEVEKLKEQLKEANVEKAEITSKFEKLSAICRSQRQELQDLKQALAGRTPSPSREGLKTSTAITSSAPMDRTEWKTPSSEPKSWQAFPEEPQQQKSLSAGNTTKSVRSNNGRQNKQPVQLATNFDSWGFGTDSFSAVPTGSSQMQRSSSAGGKSQGFDEAKTFESKPTSQPAGWAGF* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2172 672 MobiDBLite consensus disorder prediction 414 445 - -
Vra5g2172 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vra5g2172 672 CDD STKc_GAK_like 26 298 - -
Vra5g2172 672 MobiDBLite consensus disorder prediction 536 672 - -
Vra5g2172 672 MobiDBLite consensus disorder prediction 329 346 - -
Vra5g2172 672 PANTHER NUMB-ASSOCIATED KINASE, ISOFORM A 1 660 - -
Vra5g2172 672 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2172 672 Pfam Protein kinase domain 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2172 672 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2172 672 SUPERFAMILY Protein kinase-like (PK-like) 28 343 IPR011009 -
Vra5g2172 672 MobiDBLite consensus disorder prediction 414 431 - -
Vra5g2172 672 MobiDBLite consensus disorder prediction 548 664 - -
Vra5g2172 672 Coils Coil 484 539 - -
Vra5g2172 672 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
Vra5g2172 672 PANTHER SERINE/THREONINE PROTEIN KINASE 1 660 - -
Vra5g2172 672 MobiDBLite consensus disorder prediction 347 367 - -
Vra5g2172 672 MobiDBLite consensus disorder prediction 301 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2172 Vra-Chr5 27589756 27594785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2172 26 292 Miscellaneous Gene Families AT2G34180 29.893 1.78e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vra5g2172 Pkinase 3.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2172 K08853 - gmx:100808507 1124.77