Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2165 ATGGGAAAGTTATCAATCATGTTGCAGGGTAAGTGCAAGAACCGCAAGGAATCATCATTATCATGGCCATTGACAAAATGCTTTCACCACACCAATACAAGAGATACTGCCACGAGAATTGCAGAAGAATGGAAAGTTGATTTTTCTGATCTCTTCATCGGGCACAGGTTTTCTCACGGTGCTCACAGTAAAATTTACCATGGCATATACAAGCAGCAACATGTTGCTATCAAAATTTTCCAGGTAGGAGAATGTGAGGAAGATGGAAACCTTAGATCTCTTTTGGAGACACAATTTTTGAGAGAAGTTGCACATCTACCTCGTCTGCACCATCAGAATGTGGTGAGTTTCATAGCAGCATGCAGATATTCTGATTCTTATTACATTCTCACGGAGTATCAACAAAAGGGTTCTTTGAGGGCACATTTGAACACGTTGGAGTCGAAGCCAATCTGTCTCAGGAAGGTCATACTTTTTGCTTTGGATATTGCTCGTGGAATGGAATATGTGCATGCACAAGGCATCATTCACAGAGACCTTAAACCTGAGAATGTGCTTGTAGATAAGAACTGTAACCTCAGAATTGCTGATTTTGGCGTTGCTTGTTTGGCTTCAAAGTGTGACTCATTGAGGGGAACGTATCGTTGGATGGCACCAGAGATGATCAAAGGAAAATGCTATGGGAGGAAGGTTGATGTGTATAGTTTTGGGCTTATTTTGTGGGAGTTGGTGAGTGGAACACTTCCATTTGAGCATATGAATCCAGTTCAGGTTGCTGTTGCAGTAGTTCATAGGAATTCAAGGCCTGTTATTCCCACACATTGCCCACAAGGTTTGAGAGATTTGATCAATCAATGTTGGGCATTGAAACCACAGAAGAGACTTGAATTCTGTCAGATTGTTCGAGTTTTGGAGCAAATGATCAAAGACATTTTCCTCTAA 942 0.413 MGKLSIMLQGKCKNRKESSLSWPLTKCFHHTNTRDTATRIAEEWKVDFSDLFIGHRFSHGAHSKIYHGIYKQQHVAIKIFQVGECEEDGNLRSLLETQFLREVAHLPRLHHQNVVSFIAACRYSDSYYILTEYQQKGSLRAHLNTLESKPICLRKVILFALDIARGMEYVHAQGIIHRDLKPENVLVDKNCNLRIADFGVACLASKCDSLRGTYRWMAPEMIKGKCYGRKVDVYSFGLILWELVSGTLPFEHMNPVQVAVAVVHRNSRPVIPTHCPQGLRDLINQCWALKPQKRLEFCQIVRVLEQMIKDIFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2165 313 SMART serkin_6 51 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2165 313 Gene3D Transferase(Phosphotransferase) domain 1 136 311 - -
Vra5g2165 313 Gene3D Phosphorylase Kinase; domain 1 39 135 - -
Vra5g2165 313 Pfam Protein tyrosine and serine/threonine kinase 54 304 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 CDD STKc_MAP3K-like 59 304 - -
Vra5g2165 313 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 PRINTS Tyrosine kinase catalytic domain signature 212 222 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 PRINTS Tyrosine kinase catalytic domain signature 275 297 IPR001245 GO:0004672|GO:0006468
Vra5g2165 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vra5g2165 313 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 307 - -
Vra5g2165 313 SUPERFAMILY Protein kinase-like (PK-like) 22 304 IPR011009 -
Vra5g2165 313 ProSiteProfiles Protein kinase domain profile. 51 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2165 313 PANTHER TYROSINE KINASE FAMILY PROTEIN 5 307 - -
Vra5g2165 313 PIRSF ILK 16 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2165 Vra-Chr5 27485878 27486819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2165 5 307 MAP Kinase Kinase Kinase AT5G58950 50.980 3.57e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra5g2165 PK_Tyr_Ser-Thr 5.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2165 - - var:108332641 598.586