Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2161 ATGGCTTCTCTTCACTCTTCTCTTCTATTGCCTCCGAGTCTCCTTTCCCTTACTTCTCCTTCAAGTTCCCCTTCTCACATTCTCTTGAACCTGAGACCCTCCACCACCCACTTGCGACCCCTTTTCACCACACGGCGCCGTTTTGGGAGATCCTTCGCGGTGGCTGAGCAGGCAACGTTGACGGAGGCCGCAAGAAGGCTCTACGTTGGAAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAAGATTGTTCAAGAACATGGCGTTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCGTTTGTTACAATGAAAACTGTTGAGGACGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATTAAAGTAAATGTTACCGAAAAACCTTTATCAGCATCGGATTTGCCTTCATCCCAAGCTGAGGAATCTCAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACATTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTCATTAGAAGGGCAAAAAATCCGTGTGAACAAGGCATAG 726 0.4559 MASLHSSLLLPPSLLSLTSPSSSPSHILLNLRPSTTHLRPLFTTRRRFGRSFAVAEQATLTEAARRLYVGNIPRTVNNDELAKIVQEHGVVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNVTEKPLSASDLPSSQAEESQFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSSLEGQKIRVNKA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2161 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Vra5g2161 241 PANTHER OS02G0815200 PROTEIN 1 241 - -
Vra5g2161 241 CDD RRM_HP0827_like 66 143 - -
Vra5g2161 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Vra5g2161 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Vra5g2161 241 Gene3D - 152 241 IPR012677 -
Vra5g2161 241 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Vra5g2161 241 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 241 - -
Vra5g2161 241 SUPERFAMILY RNA-binding domain, RBD 156 241 IPR035979 GO:0003676
Vra5g2161 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Vra5g2161 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Vra5g2161 241 Gene3D - 50 151 IPR012677 -
Vra5g2161 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2161 Vra-Chr5 27454804 27458571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2161 54 238 Eukaryotic Initiation Factors Gene Family AT1G22760 26.486 1.27e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2161 K13126 - gmx:100811197 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2161 5 27454804 27458571 Vra5g2161 5 27454804 27458571 ECH