Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2160 ATGGCTGTGGCATCATTCTCTTCTTCCTTCACCTATGACGTGTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACAGTTTCACCGGCAATCTCTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGAAGCTTCCCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATAGAAGGTTCCAGAATTTTCATCATCGTTTTCTCTCGCAACTACGCCTCTTCCTCCTTTTGCTTGAACGAGCTCGCCTACATTCTTCCCTACGCTAATAGAAATGGTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGCCACCACATGGGTAGCTATGGAGAAGCTTTGGATACTCATGAAAACAGGTTCAAAGCTACGAGTCAGGGTTTTGAGCTTAACATGGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTGGAACAGCTAACTTATCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACGAGTTTATCAAGAGGATAGTTGACTTGGTCTCCAACAAGATTAACCGTGCTCCTTTACACGTTGCGGATTATCCAGTTGGACTAGAGACTCGAGTGCTAGAAGTAAAGTTGCTTCTGGATATAGGATCTGATGATGGTGTCCACATGGTAGGGATCCATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCAGTTTACAATTCCATCGCTGACCATTTTGAAGGCTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACAGCATCTTCAAAGAATCCTTCTTTCTCAAATGGTTGGAGAAAATAATGTCAACATAACTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGACAGAAGAAGATTCTCTTGATTTTAGATGACGTTGACAAACATGAACAGTTACAAGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACATTTGTTGTCATGTCACTTGATCGAAAAATTATATAAAGTGAAGAAGTTGAAAAAGAACAATGCTCATCGACTGCTTAGTTGGAAAGCTTTTAGAACAGAAGAAGTTGATACAAGTTATTTGAATGTAATGGATCGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATCGGTTCGAAGTTGTTTAGAAAAAGTGTAAAGGAATGGGAATCTGCCATCAAACAGTATGAGAAAATTCCTAACAATCAAATCCTGGAGGTGCTTAAAATAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTTCTTGTTGCTTTAAAGGATATGCATTGTCAGAGGTGGAAGATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAGTCTCTCATAAAATATGGTTGGAGTTGTGTGGTTACAATGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGGCAGAAATCTCCAAATAGGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGAGATAATTAAAGTTTTGGAAGACAACTTGGGGAGTGGAGAAATTGAAATCATATGTTTAAATTCCTCCTTACCTGACAAAGAAGAAATAGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATCATTAAAAATGGTAATTTTTCGGAAGGTCCTGAATATCTTCCAAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACATGGGCTACCGCCAGATTTTCGTTCAAAGAAACTTTCCTTATGCAAATTACCTTCAAGTTGTTTTGGGTCACTCGAATTGGCTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATCTATCTGGGATGCCAAATTTAGAAAGATTTTCATTCAAGAATTGTAAGAGTTTAATTACAATTCATGACTCCATTGGCTTCCTAGGTAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAAGCTTAGGAGTTTTCCCCCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGAGCTTCCCAGAAATATTAGGAAAAATGGGACAGATAACAGAACTTGTCTTGGAGGACTGTCACATAAAAGAATTGCCAATTTCATTTCAAAATCTCACCGAGCTTCGAACATTACAGTTGCGTTCGTGTCCAACGTTAAGGTTACCTAGTAGTATTGTCATGATGCCAAAACTGGCCAACATTATTGCTTGGGAATCTAAAGGGTGGCTATTTCCAAAACAGGTCGAGAGGGAAGAGAAAATAGGCTCAATGGTGTCTTCAAACGTAGATTGTCTTGTTCTCTCAGGGTGCAAACTCTCGGATGACTTTTTCCCAATAATTCTTGAATGGTTTGCTAATGTAAAAGATTTAAACCTATCAAGGAATAACTTCACGGTTCTTCCTGAGTGCATCGCCAATTGTCACTTGTTATGCAAGCTTACTTTAGATGCCTGTCATAGTCTTCGAGAGATTAGAGGGATTCCACCAAACATACGACAGTTACTAGCAAGAAATTGTAAATCCTTCACTTCTTCTTGCAGAAGAACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTTCGTTTTCAGGAGCAAGGTTTCCAGAATGGTTCGATCACCACAGTCGGGGAGCATCTTGTTCTTTCTGGGTTGGCAAAAAATTCCCTTCCATTGCTCTTTGTATTGCTATTGGACCAACTCATTTGGAACACCTTGAAATTGTTGGACCTATCATGATCATCAACTGCATTGAATGTTCATTTGATTGGGAGGAGAATCCTTATTTATATATGCTCCCTCATCACACATATATTTTCGATTTGCAAAATATAGTTTTTCCAGATTATCTAGACAGATTTGTTTCAGAAAATGAATGGAACCACGTGGAGATTACATACTCAGTCAAGCAGAGATTCAAGGGAAAAGACAAACATGAGGTGACCCCAATCTCTATAGAAAATGGAATCTATGTGTTCAAACAGAAGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTTGTAA 3201 0.3974 MAVASFSSSFTYDVFLSFRGEDTRYSFTGNLYRALRDRGIHTFIDDEKLPKGDEITSALEKAIEGSRIFIIVFSRNYASSSFCLNELAYILPYANRNGLLVLPLFYDVVPSHVRHHMGSYGEALDTHENRFKATSQGFELNMEKLNKWKMALRGTANLSGYHFKHGEEYEYEFIKRIVDLVSNKINRAPLHVADYPVGLETRVLEVKLLLDIGSDDGVHMVGIHGLGGVGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLQHLQRILLSQMVGENNVNITSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKHLLSCHLIEKLYKVKKLKKNNAHRLLSWKAFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFRKSVKEWESAIKQYEKIPNNQILEVLKISFDALEEVEKSVFLDISCCFKGYALSEVEDILRAHYGDCMKYHIGVLVEKSLIKYGWSCVVTMHDLIEDMGKEIVRQKSPNRPGKRSRLWSPEEIIKVLEDNLGSGEIEIICLNSSLPDKEEIVEWNRKAFKKMKNLKTLIIKNGNFSEGPEYLPNSLRVLEWLKYPSHGLPPDFRSKKLSLCKLPSSCFGSLELAEFSKKFMNMTLLNFDECEGLTQIPDLSGMPNLERFSFKNCKSLITIHDSIGFLGKLNSLNAVGCSKLRSFPPLKLTSLENLELSYCYSLESFPEILGKMGQITELVLEDCHIKELPISFQNLTELRTLQLRSCPTLRLPSSIVMMPKLANIIAWESKGWLFPKQVEREEKIGSMVSSNVDCLVLSGCKLSDDFFPIILEWFANVKDLNLSRNNFTVLPECIANCHLLCKLTLDACHSLREIRGIPPNIRQLLARNCKSFTSSCRRTLLNQKLHEAGNTMFSFSGARFPEWFDHHSRGASCSFWVGKKFPSIALCIAIGPTHLEHLEIVGPIMIINCIECSFDWEENPYLYMLPHHTYIFDLQNIVFPDYLDRFVSENEWNHVEITYSVKQRFKGKDKHEVTPISIENGIYVFKQKSSMEDIQFTDPHKKRRLDVDPEL* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2160 1066 SMART AAA_5 217 351 IPR003593 -
Vra5g2160 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Vra5g2160 1066 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 921 - -
Vra5g2160 1066 SUPERFAMILY L domain-like 554 891 - -
Vra5g2160 1066 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Vra5g2160 1066 Pfam TIR domain 12 187 IPR000157 GO:0007165
Vra5g2160 1066 Pfam NB-ARC domain 205 422 IPR002182 GO:0043531
Vra5g2160 1066 Gene3D Ribonuclease Inhibitor 793 903 IPR032675 -
Vra5g2160 1066 Gene3D Ribonuclease Inhibitor 493 782 IPR032675 -
Vra5g2160 1066 Gene3D - 185 347 IPR027417 -
Vra5g2160 1066 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Vra5g2160 1066 SMART till_3 11 158 IPR000157 GO:0007165
Vra5g2160 1066 Gene3D - 5 184 IPR035897 -
Vra5g2160 1066 Gene3D - 354 438 IPR042197 -
Vra5g2160 1066 PRINTS Disease resistance protein signature 220 235 - -
Vra5g2160 1066 PRINTS Disease resistance protein signature 296 310 - -
Vra5g2160 1066 PRINTS Disease resistance protein signature 389 403 - -
Vra5g2160 1066 PRINTS Disease resistance protein signature 701 717 - -
Vra5g2160 1066 CDD AAA 197 337 - -
Vra5g2160 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 161 IPR035897 -
Vra5g2160 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 921 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2160 Vra-Chr5 27445676 27449440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2160 6 850 WRKY Transcription Factor Family AT4G12020 30.011 1.76e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2160 - - gmx:100780257 1314.67