Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2159 ATGGCGCCGAAGAAGCCGAGAAGCGTGTCGAGGAACCCTGAACTCATCAGGGGTATTGGAAAGTATTCCAGGTCTCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAACACGGCGGCGTTTTTCCTCGCCACGACCCCTCGCCCAAGCCCGACGCCCCTGCCCAGAAGCCTCCCAAGTTTTACCCCGCCGACGATGTCAGGAAGCCCCTCGTCAACAAGCACAAGCCCAAGCCCGCCAAACTCAGGGCTAGCGTTACTCCAGGAACAGTGTTGATTCTGCTTGCTGGCAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGATTGCTTCTGGTAACAGGGCCCTTCAAGATCAATGGTGTTCCTCTTAGAAGGGTGAACCAATCTTATGTCATTGGTACATCCACAAAAGTGGACATCTCCGGTGTTAATGTCGATAAATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAAAACAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAAAAAAATGTGCTTCCCCAAGAGAAGAAAGATGACCAGAAAACCGTGGATACTGCTTTGTTAAAGGCAGTTGAGAGTGTTCCAGAACTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.4993 MAPKKPRSVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKHGGVFPRHDPSPKPDAPAQKPPKFYPADDVRKPLVNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFSKDAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAVESVPELKSYLGARFSLKAGMKPHELVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2159 232 Pfam Ribosomal protein L6, N-terminal domain 4 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vra5g2159 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 - -
Vra5g2159 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra5g2159 232 Gene3D - 86 170 IPR014722 -
Vra5g2159 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra5g2159 232 CDD KOW_RPL6 80 232 IPR041997 -
Vra5g2159 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Vra5g2159 232 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2159 Vra-Chr5 27442956 27444785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2159 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.603 1.80e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2159 K02934 - gmx:100784101 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2159 5 27442956 27444785 Vra5g2159 5 27442956 27444785 ECH