Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2151 ATGGATAAGGGGGTGCCACCTAGCCTATTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTAAAATTAGAGAATTCTAAGCCAATTAAGGTTATTTCAGGGTCTTTGTCGCCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGAAAACATCCCAGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACCCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTTACGCGTCAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAGTACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCGCAGACAAGGGAATCACATGTGCCTCGTAATGGGGGAACAAGTACTTCATCTTCCAAACCCACTAGTGGTAATCAAAGATCATCTCAGCAGAATACATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCAATTCAAACATCTCCACTTGGAATGAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCAAGGCAAAAAAGGCCATCACATGGGTGATTTCATACCTCCAGAAGAACTTGAGAAGTTCTTGGCCAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAGGAGCATGTAGAGAGGTCAAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCAGAGGATGACATATATGAACAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGAAAAGCTTATTACTGA 1311 0.4294 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESHVPRNGGTSTSSSKPTSGNQRSSQQNTSYQIPASALYESADNPRASGSSIQTSPLGMSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2151 436 Gene3D Surp module 118 202 IPR035967 GO:0003723|GO:0006396
Vra5g2151 436 ProSiteProfiles G-patch domain profile. 353 400 IPR000467 GO:0003676
Vra5g2151 436 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 436 - -
Vra5g2151 436 MobiDBLite consensus disorder prediction 23 145 - -
Vra5g2151 436 MobiDBLite consensus disorder prediction 201 273 - -
Vra5g2151 436 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 436 IPR040169 -
Vra5g2151 436 MobiDBLite consensus disorder prediction 42 77 - -
Vra5g2151 436 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Vra5g2151 436 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Vra5g2151 436 SMART G-patch_5 351 398 IPR000467 GO:0003676
Vra5g2151 436 SUPERFAMILY Surp module (SWAP domain) 131 197 IPR035967 GO:0003723|GO:0006396
Vra5g2151 436 MobiDBLite consensus disorder prediction 122 136 - -
Vra5g2151 436 Pfam Surp module 146 195 IPR000061 GO:0003723|GO:0006396
Vra5g2151 436 MobiDBLite consensus disorder prediction 292 320 - -
Vra5g2151 436 Pfam G-patch domain 354 397 IPR000467 GO:0003676
Vra5g2151 436 MobiDBLite consensus disorder prediction 208 273 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2151 298 409 C2H2 Transcription Factor Family AT5G26610 35.043 3.72e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2151 K13096 - gmx:100786213 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2151 5 27353622 27359548 Vra5g2151 5 27353622 27359548 ECH