Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2147 ATGGCTCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCCGAAACCATTACTCTATGCGTCAACAACTGCGGGGTCACAGGGAACCCTGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACAGCTTCCACCGCCACAACGTCATCAGCTACCGCGCCCACCGCCGGAGTCTCCTCGCCCTCCGCTAGATCCGTTGCGTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCCTTGGCAGCAGATCCTCCCTCCTCCGACCAAAACACGCCGTCCGAAGCCAAACGCGTCGTCAATCGCTGCTCCGGTTGCCGGCGGAAGGTCGGACTCACCGGATTCCGGTGCCGGTGTGGCGAACTCTTCTGCGCGGAGCATCGGTACTCCGATCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTTAGAGCCGCGAAGATCGTCAAAGTCTGA 501 0.5968 MAQKTENEETEFKVPETITLCVNNCGVTGNPATNNMCQNCFTAFTASTATTSSATAPTAGVSSPSARSVASARPQKRSFPEEPSLAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2147 166 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vra5g2147 166 Gene3D - 1 69 - -
Vra5g2147 166 Gene3D - 82 162 IPR035896 -
Vra5g2147 166 MobiDBLite consensus disorder prediction 54 99 - -
Vra5g2147 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 57 - -
Vra5g2147 166 MobiDBLite consensus disorder prediction 54 72 - -
Vra5g2147 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 166 - -
Vra5g2147 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Vra5g2147 166 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 166 - -
Vra5g2147 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Vra5g2147 166 SUPERFAMILY AN1-like Zinc finger 92 160 IPR035896 -
Vra5g2147 166 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vra5g2147 166 Pfam A20-like zinc finger 20 41 IPR002653 GO:0003677|GO:0008270
Vra5g2147 166 Pfam AN1-like Zinc finger 107 144 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2147 Vra-Chr5 27323079 27324121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2147 8 166 C2H2 Transcription Factor Family AT3G52800 42.262 7.25e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2147 - - var:108333085 302.753