Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2123 ATGGCAAAGAAGGGTTGGTTAAGCATGATTAAGAAGCTCTTTTTATGGGGATCACAGACCTCACAAACGAAGAAGGAAAAAAGAAGGGTTTGGATATTTGGGAGGGTTAAGACCAAGAGGTTGCCTTCAATTACAGCACCACCACCCTCAAAACAAACAAGACTAAGTCAAGCTGAAGAAGAACACAGCAAGCATGCTTTAACAGTGGCCATTGCTTCGGCTGCTGCTGCTGAAGCTGCTATCACTGCTGCTCAGGTTGCTGTTGAGGTTGTCAGGCTCCAATCAGCTCATCAACAACTTAATGAAAAACAGGAACAGCTTCAACCTGTTAAAACCAGACATGATGCTCCTCATTCCACACACCACTGCCAGAGGAAGATGGAAGAAGCTTCAGCCATCAAAATTCAAACAGCATTCAGAGGTTTCCTATCAAGGAAAGCTCTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATAATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGTGCACTCTGAAGTGCTTGGAGTCCATAGTGAGTATCCAGTCACATGTCTTTGCAAGGAGACTCCAAATGGTTGAAGGAAGATGGGATTGTGGTGAACATGAAGATATGGAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGAATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCCTCTTGCATGAGCAAGAAAGAAGCAGTTGTTAAGAGAGAAAGAGTAAAAGAATATTCCTTCAACCACAGAAAGTCAGCTGAATCAGAAAGAGATAAAATAAATGGAAGATGGAGGTACTGGATGGAACAGTGGGTAGACACACAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGTCTCAGTTTTCAGCTCACATCACTCTAGACCAGGGGAGGAAAGTGGAAGGAGAGAACTAAAACTCAGAAATATTCAGAGACAGAATCAGTATGAAGGATTAGATTCTCCAGCAGTTTCTTCAAGGAACACATTTCCTCACAGGAGCCAGACTTCAGAGGCAGAAGATCACTCATTCCCAAGCTCACCAGCAATTCCTACATATATGGCTGCAACAAAATCAACTCAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGTTAGGAGGGAATTTTGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGTTACCACTTGTGCCTTCTACCAATCAACAAAGATCTCCTAGCTTAAAGGGCCTTCCTAGACCGCTGAAGTTAAGTCAGACATTGAGGGATCTCAGCATTAACTCTGATTGCTCTGTGCCAATTTGA 1329 0.4289 MAKKGWLSMIKKLFLWGSQTSQTKKEKRRVWIFGRVKTKRLPSITAPPPSKQTRLSQAEEEHSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAHQQLNEKQEQLQPVKTRHDAPHSTHHCQRKMEEASAIKIQTAFRGFLSRKALRALKGIVKLQAIIRGRAVRRQALCTLKCLESIVSIQSHVFARRLQMVEGRWDCGEHEDMEGSRDKIIRMDSNSERRWNDSILLKEEVDASCMSKKEAVVKRERVKEYSFNHRKSAESERDKINGRWRYWMEQWVDTQLSKSKELEDLVSVFSSHHSRPGEESGRRELKLRNIQRQNQYEGLDSPAVSSRNTFPHRSQTSEAEDHSFPSSPAIPTYMAATKSTQAKARSTSSPRARLGGNFDMNSDSYSPCKKKLPLVPSTNQQRSPSLKGLPRPLKLSQTLRDLSINSDCSVPI* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2123 442 MobiDBLite consensus disorder prediction 299 422 - -
Vra5g2123 442 Pfam Protein of unknown function (DUF4005) 347 410 IPR025064 -
Vra5g2123 442 PANTHER IQ-DOMAIN 11 1 436 - -
Vra5g2123 442 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Vra5g2123 442 MobiDBLite consensus disorder prediction 321 343 - -
Vra5g2123 442 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Vra5g2123 442 SMART iq_5 127 149 IPR000048 GO:0005515
Vra5g2123 442 MobiDBLite consensus disorder prediction 305 320 - -
Vra5g2123 442 MobiDBLite consensus disorder prediction 360 394 - -
Vra5g2123 442 Gene3D - 126 176 - -
Vra5g2123 442 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Vra5g2123 442 MobiDBLite consensus disorder prediction 42 61 - -
Vra5g2123 442 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2123 Vra-Chr5 26982751 26986179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2123 3 441 IQD Protein Family AT5G13460 41.996 9.72e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2123 - - gmx:100794802 694.501