Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2114 ATGGACTCAGGTTCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGAGTCTCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCAGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGAATGGTGAGTTATTTCAGTGAAGCACTTGGACACAGGATAATAAAACATCTGCCAGGTGTATACAAATCTATCAGCCCCTCAAAAACATCACTATCTTCAGACGATATCCTTGCTGAGAAATACTTCTATGAGTTGTGTCCCTTTTTGAAGTTTTCATACCTGATCACAAACCAAGCCATTGTGGAGGCAATGGAATGTGAAATGGTGGTTCACATTATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGGGGACGTCCACCCCATCTGAAAATTACAGGCATTAATGAGTCGAAGGAAGTGTTGGATCAGGTGAACTTTCATGTGACATCTGAAGCTGGGAAATATGATTTTCCTTTACAGTTCTACCCAATTGTTAGCAAACTGGAAGATGTTGACTTTGAAAAGTTGCCTGTTAAGACTGGAGATGCTGTTGCAATAACTTCTGTTCTTCAGCTGCATTTGCTTCTTTCCACTGATGATGACGTTGCTGGAAGAATCTCACCAGCAGTGGCAGCATCCATGAATCTGCAGAGAACAGTGCATATGGGCCAAAGGACTTTTGCGGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTTGGTGCCTCGCCTAAGATGGGGAATCTTCTGAAGGCCATGCGAAAGCTCAATCCAAAACTGGTGGTGGTCACTGAACAAGAATCAAATTTGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGATTGCTTGGACTCTACTGTAATGAGAACATCAGTTGAGAGGCAAAAACTTGAGAGGACACTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCGAAGGCTTGAAATGGCTGGTTTTGTGAAAGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAGTAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGCGATAGACCATTGTTTTCTGTATCTGCTTGGAGTTTTAGGAGATAA 1329 0.4101 MDSGSPCQWLRELRLESQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTSLSSDDILAEKYFYELCPFLKFSYLITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGRPPHLKITGINESKEVLDQVNFHVTSEAGKYDFPLQFYPIVSKLEDVDFEKLPVKTGDAVAITSVLQLHLLLSTDDDVAGRISPAVAASMNLQRTVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGNLLKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERTLFGEQIKNIIACEGVERKERHEKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSSKYKFREENDCLFVCWSDRPLFSVSAWSFRR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2114 442 Pfam GRAS domain family 23 438 IPR005202 -
Vra5g2114 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Vra5g2114 442 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 440 - -
Vra5g2114 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2114 Vra-Chr5 26910642 26912868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2114 1 442 GRAS Transcription Factor Family AT1G50420 48.559 6.36e-146 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra5g2114 GRAS 6e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2114 - - gmx:106798410 787.334